Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq5 120 9e-22 seq6 113 1e-19 seq1 113 1e-19 seq9 104 7e-17 seq8 95.1 4e-14 seq2 91.5 4e-13 >seq5 Length=223902240 Score = 120 bits (132), Expect = 9e-22 Identities = 210/300 (70%), Gaps = 8/300 (3%) Strand=Plus/Plus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 ||||| |||||||| || | || |||||||| ||||| || ||| |||| | ||| Sbjct 17283286 GCGATGAGACCACATTTCTCGCATACATGGACTCTGTATGCGTCACTCTGGTCAAACAGC 17283345 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523 | |||| |||| || ||| || |||| ||||||||||| | |||||||| || Sbjct 17283346 CTTTCCTTCAGGAAGAAAGCTGCTCCATGTGCGATCATACAATCCCTTTCCATTTCTCCA 17283405 Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATA 251583 || || ||||| ||||| |||| || ||||| || || || || ||||| | || | Sbjct 17283406 AAGCGGAGACCTCCATCACGAGACCGCCCCTCTGCTGGTTGCCGGGTGAGTATCTGCACA 17283465 Query 251584 GGACCGATGGAGCGGCT---ATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAG 251640 ||||| | | | || |||| ||| |||| ||||| |||||||| | ||||| Sbjct 17283466 GGACC-ACG--TCCTCTCGAATGTATCTTGTCATCCACCATGTGCTTGAGTCTTTGGTAA 17283522 Query 251641 AATGCGGGACCGATGAAGATGCTCGAAGGCA-TTTGCTCTCCAGTTAGAGCGTTATACAT 251699 ||| ||| || | ||| || ||| || || ||| || |||||| || | || ||||| Sbjct 17283523 TATGTGGGGCCCAGGAAAATCATCGCAGTCAGTTTTCT-TCCAGTGTGACCATTGTACAT 17283581 >seq6 Length=174033170 Score = 113 bits (124), Expect = 1e-19 Identities = 341/511 (67%), Gaps = 18/511 (4%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| | |||| | | ||| || | || ||||| || || | ||| || || Sbjct 95645587 CTATCAAAACGCCCAGGTCTAAGTAAAGCGGAATCCAATATGTCAGCCCGGTTAGTGGCA 95645646 Query 288910 GCCAATACAACAATAGATTCGGT-TTGC--TTAAATCCATCCATACTTGTTAAAATTTGA 288966 || |||| |||||| | | || |||| | || |||||||| |||| | |||| Sbjct 95645647 GC-AATA--ACAATAATTCCAGTGTTGCCCTCGAAACCATCCATCTCAGTTAGTAGTTGA 95645703 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttt 289026 || || || || ||||||||||||||| ||| | ||| ||| | | | || || Sbjct 95645704 TTGAGAGTCTGCTCCCTTTCATCATTTCCACCACC--AAT-ACCTGTACCTCT---TTGC 95645757 Query 289027 ttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 | ||||||||||||||||| |||| || | | || |||| ||| | | || | Sbjct 95645758 CTTCCAACAGCATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCCTTC 95645817 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 || | || | || | ||| ||||||| ||||||| |||| || |||||||||||| Sbjct 95645818 TTGAAAAGGTCACGAACTCTGGAAGCTCCAACACCAACAAACATCTCCACAAATTCAGAA 95645877 Query 289147 GCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205 | || | |||| | |||| || || || ||||| | |||| | || || | || Sbjct 95645878 CCTGA-AATTGAGAAAAATGGCACGCCAGCCTCTCCTGCAATTGCCTTGGCAAGCAAAGT 95645936 Query 289206 CTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGA 289265 ||||| || ||||| || || | | ||||| ||||| || | || ||| ||| Sbjct 95645937 TTTACCCGTCCCAGGAGGACCGACAAGCAGAACACCCTTAGGAATGCGAGCACCAACAGC 95645996 Query 289266 CTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCC-TCAAGTTCATATTTTGCCT 289324 | | | || || |||| || || || || | |||| | ||| || | || || | Sbjct 95645997 AGTGAACCTTTCGGGTTTCTTCAAGAACTCAACCACTTCCATGAAG-TCTTGCTTCGCTT 95646055 Query 289325 CATC-ACATCCTGCTACATCAGCAAAAGTAA 289354 |||| ||| || || |||||| |||| |||| Sbjct 95646056 CATCGACA-CCAGCAACATCATCAAATGTAA 95646085 >seq1 Length=307041717 Score = 113 bits (124), Expect = 1e-19 Identities = 179/257 (70%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 ||||| |||||||| || | ||| |||||||| ||||| || ||| |||| | ||| Sbjct 254670234 GCGATGAGACCACATTTCTCACATACATGGACTCTGTATGCGTCACTCTGGTCAAACAGC 254670293 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523 | |||| |||| || ||| || |||| |||||||||||| | |||||||| || Sbjct 254670294 CTTTCCTTCAGGAAGAAAGCTGCTCCATGTGCAATCATACAATCCCTTTCCATTTCTCCA 254670353 Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATA 251583 || || ||||||||||| |||| | ||||| || || || || ||||| | | | Sbjct 254670354 AAGCGGAGACCACCATCACGAGATCGCCCCTCTGCTGGTTGTCGGGTGAGTATCTGAACA 254670413 Query 251584 GGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAAT 251643 ||||| | | |||| ||| |||| ||||| |||||||| | ||||| | Sbjct 254670414 GGACCACGTCCTCTGGAATGTATCTTGTCATCCACCATGTGCTTGAGTCTTTGGTAATAC 254670473 Query 251644 GCGGGACCGATGAAGAT 251660 | ||| || | ||| || Sbjct 254670474 GTGGGTCCCAGGAAAAT 254670490 Score = 91.5 bits (100), Expect = 4e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 156063 CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCA 156122 ||||||||||| ||||| |||||||| | ||| ||||||| || |||| ||| ||| ||| Sbjct 17821910 CCACCCTGATCAACATAGCGAGCAGTATCATTAAAGACACATAACATAAGAACAATTCCA 17821851 Query 156123 TTGGAAGTGCCATTGGTTCCGCGAATAT 156150 || || || ||||| ||||| ||||||| Sbjct 17821850 TTTGATGTTCCATTTGTTCCTCGAATAT 17821823 >seq9 Length=159769782 Score = 104 bits (114), Expect = 7e-17 Identities = 339/511 (66%), Gaps = 18/511 (4%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 || ||||| | |||| | | ||| || | || || || || |||| ||| || || Sbjct 113593981 CTGTCAAAGCGCCCAGGTCTAAGTAAAGCGGAATCCAAGATGTCAGCTCGGTTAGTGGCA 113594040 Query 288910 GCCAATACAACAATAGATTCGGT-TTGC--TTAAATCCATCCATACTTGTTAAAATTTGA 288966 || |||| |||||| | |||| |||| | ||| |||||||| |||| | |||| Sbjct 113594041 GC-AATA--ACAATAATTCCGGTGTTGCCCTCAAAACCATCCATCTCAGTTAGTAGTTGA 113594097 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttt 289026 || || || || ||||||||||||||| ||| | ||| ||| | | | |||| Sbjct 113594098 TTTAGAGTCTGCTCCCTTTCATCATTTCCACCAC--CAAT-ACCTGTA---CCTCTTTGC 113594151 Query 289027 ttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 | ||||||||||||||||| || | || | | || |||| || | | || | Sbjct 113594152 CTTCCAACAGCATCAATTTCATCGACAAACACTATGCAAGGAGCGTTCTCCTTGGCCTTC 113594211 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 || | || | ||| | ||| || |||| ||||||| |||| || ||||| |||||| Sbjct 113594212 TTGAAAAGGTCACGTACTCTGGAAGCACCAACACCAACAAACATCTCCACAAACTCAGAA 113594271 Query 289147 GCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205 | || | |||| | |||| ||| || || ||||| | |||| | || || | || Sbjct 113594272 CCTGA-AATTGAGAAAAATGGTACGCCAGCCTCTCCTGCAATTGCCTTGGCAAGCAAAGT 113594330 Query 289206 CTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGA 289265 ||||| || ||||| || || | | ||||| || || || | || ||| ||| Sbjct 113594331 TTTACCAGTCCCAGGAGGACCGACAAGCAGAACACCTTTAGGAATGCGAGCACCAACAGC 113594390 Query 289266 CTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCC-TCAAGTTCATATTTTGCCT 289324 | | | ||||| |||| || || || || | ||| | ||| || | || || | Sbjct 113594391 AGTGAACCTTTCAGGTTTCTTCAAGAACTCAACCACCTCCATGAAG-TCTTGCTTCGCTT 113594449 Query 289325 CAT-CACATCCTGCTACATCAGCAAAAGTAA 289354 ||| |||| || || |||||| |||| |||| Sbjct 113594450 CATCCACA-CCAGCAACATCATCAAATGTAA 113594479 Score = 95.1 bits (104), Expect = 4e-14 Identities = 88/110 (80%), Gaps = 4/110 (4%) Strand=Plus/Minus Query 156045 AAAC-TACCATTCCTCTTGCCACC---CTGATCTACATACCGAGCAGTCTTATTGAAGAC 156100 |||| |||| || || |||||||| |||||| ||||| |||||||| | ||| ||||| Sbjct 15725547 AAACATACCCTTTCTTTTGCCACCACCCTGATCAACATAGCGAGCAGTATCATTAAAGAC 15725488 Query 156101 ACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATAT 156150 || || |||||||| ||| ||||| || | ||||| ||||| ||||||| Sbjct 15725487 ACGTAACATAGGAACAATTCCATTTGATGATCCATTTGTTCCTCGAATAT 15725438 Score = 91.5 bits (100), Expect = 4e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 156063 CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCA 156122 ||||||||||| ||||| |||||||| | ||| ||||||| || |||| ||| ||| ||| Sbjct 145279541 CCACCCTGATCAACATAGCGAGCAGTATCATTAAAGACACGTAACATAAGAACAATTCCA 145279600 Query 156123 TTGGAAGTGCCATTGGTTCCGCGAATAT 156150 || || || ||||| ||||| ||||||| Sbjct 145279601 TTTGATGTTCCATTTGTTCCTCGAATAT 145279628 >seq8 Length=181122637 Score = 95.1 bits (104), Expect = 4e-14 Identities = 252/368 (68%), Gaps = 19/368 (5%) Strand=Plus/Minus Query 288984 TTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttttt--ACCAACAGCATCA 289041 |||||||||||||||| ||| ||| | || |||| || ||||| |||||| Sbjct 119106424 TTCATCATTTGAACCT---GAAAAACCTCCA-CG-TCCTCTTGCACGACCAATAGCATCG 119106370 Query 289042 ATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC-AATTGCAAATAATTCTCT 289100 |||||||||||||| | | || |||| | || || || ||| || | ||| | Sbjct 119106369 ATTTCGTCAATGAATACAATACTAGGAGCACACTGCCTAGCTTCTTGGAACAAGTTC-CG 119106311 Query 289101 TACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-A 289159 ||| | ||| | ||||| ||||||| ||||||| | || || ||| | || | | || | Sbjct 119106310 TACCCTGGACGGTCCAACACCAACAAACATTTCCATGAAATCTGAACCAGA-AATAGACA 119106252 Query 289160 TGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAG 289219 |||| ||| | || |||||| || | || || | ||||| ||||| |||| Sbjct 119106251 AAAATGGCACACCAGACTCTCCTGCTGTAGCTTTGGCGAGCAAAGTCTTCCCTGTCCCAG 119106192 Query 289220 GTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACTT-ATATTTCTC 289277 | || || | | |||| | || || |||| ||| || |||| | ||| ||| |||| Sbjct 119106191 GAGGGCCTACAAGTAGAGCACCTTTGGGTATTTTAGCTCCCA--AATCTTCATACTTCTT 119106134 Query 289278 AGGGCTCTTTAA--AAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCT 289335 |||| | ||||| |||| | |||| ||| | ||| | |||||| || ||||| || Sbjct 119106133 AGGG-TTTTTAAGGAAATGC-ACAAACTCCATTATTTCTTGTTTTGCTTCGTCACAACCG 119106076 Query 289336 GCTACATC 289343 |||||||| Sbjct 119106075 GCTACATC 119106068 Score = 84.2 bits (92), Expect = 6e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 408951 TAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCGAGTCCCACA 409010 || ||||||||||||||| || |||||||||||||||| |||| ||||||||| ||| | Sbjct 105883217 TAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 105883276 Query 409011 TAGAACAttttttt 409024 || ||||||||| Sbjct 105883277 GGGAGCATTTTTTT 105883290 >seq2 Length=244442276 Score = 91.5 bits (100), Expect = 4e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 156063 CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCA 156122 ||||||||||| ||||| |||||||| | ||| ||||||| || |||| ||| ||| ||| Sbjct 193849095 CCACCCTGATCAACATAGCGAGCAGTATCATTAAAGACACGTAACATAAGAACAATTCCA 193849036 Query 156123 TTGGAAGTGCCATTGGTTCCGCGAATAT 156150 || || || ||||| ||||| ||||||| Sbjct 193849035 TTTGATGTTCCATTTGTTCCTCGAATAT 193849008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471812565003979