Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq4 116 3e-21 seq5 104 2e-17 seq7 84.2 2e-11 >seq4 Length=246994605 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | |||||||||||| || || ||| || || |||||||| || || ||| Sbjct 242135714 CCACCCCTGAGACGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGCA 242135655 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| || ||||| || ||||| ||| | || | | ||||| ||||| || Sbjct 242135654 AGCGTGCGCCCGTCCTCGAGCTGCTTGCCGGCAAAAATGAGCCGCTGCTGGTCCGGAGGG 242135595 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || |||||| | || | || |||||| || || Sbjct 242135594 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTATCAGAAGACTCGACC 242135535 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || ||||| |||||||| | || || || || |||||||| Sbjct 242135534 TCAAGGGTGATAGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 242135488 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | |||||||||||| || || ||| || || || ||||| ||||| ||| Sbjct 242135942 CCACCCCTGAGACGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCTGCA 242135883 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || || || ||||||||| | || | | ||||| ||||| ||| Sbjct 242135882 AGGGTACGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCCGGTGGA 242135823 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || |||||| | || | ||||| || || || Sbjct 242135822 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCCACC 242135763 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || |||||||| | || || || || |||||||| Sbjct 242135762 TCAAGGGTGATCGTCTTGCCAGTAAGTGTCTTCACGAAGATCTGCAT 242135716 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | |||||||||||| || || ||| || || || ||||| || || ||| Sbjct 242113152 CCACCCCTAAGACGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGCA 242113093 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | ||| || | || ||||| ||| | || | | |||||| || || || Sbjct 242113092 AGGGTCCTCCCATCCTCCAACTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCAGGTGGG 242113033 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | ||| |||||| | || | ||||| || || || Sbjct 242113032 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATGGTGTCTGAGGACTCCACC 242112973 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || |||||||| ||||| || ||||| |||||||| Sbjct 242112972 TCAAGGGTGATTGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 242112926 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||| | ||||||||||| || || || || || || || ||||| || || ||| Sbjct 242112924 CCTCCCCTAAGGCGCAGCACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCA 242112865 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| || || || || ||||| || | || | | ||||| || || || Sbjct 242112864 AGTGTGCGTCCGTCCTCAAGCTGCTTGCCGGCGAAGATAAGCCGCTGCTGGTCAGGAGGG 242112805 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || |||||| | || | ||||||||| || || Sbjct 242112804 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCAGAAGACTCCACC 242112745 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || ||||| ||||| || | ||| || ||||| |||||||| Sbjct 242112744 TCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 242112698 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||||| || || ||| || || || ||||| || || || | |||||| | Sbjct 242136614 CGGAGCACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCTGCTAGGGTGCGGCCA 242136555 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || ||||| || | |||| | ||||| || || || || ||||||||| Sbjct 242136554 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATGCCCTCTTTG 242136495 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || || | || | ||||| || || || || || ||||| Sbjct 242136494 TCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCAACCTCCAGGGTTATG 242136435 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| ||||| || ||||| |||||||| Sbjct 242136434 GTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 242136400 >seq5 Length=223902240 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||| | ||||||||||| || || ||| || || || ||||| || || ||| Sbjct 84632612 CCTCCCCTGAGGCGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCA 84632671 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| || || || || || |||||| | || | | ||||| || || || Sbjct 84632672 AGCGTGCGCCCGTCCTCAAGCTGCTTCCCAGCAAAGATGAGCCGCTGCTGGTCTGGAGGG 84632731 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || ||||| | || | |||||||| || || Sbjct 84632732 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGGACTCCACC 84632791 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || ||||| ||||| || | |||||| ||||| |||||||| Sbjct 84632792 TCGAGGGTGATAGTCTTGCCGGTCAGGGTTTTCACAAAGATCTGCAT 84632838 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||| | ||| ||||| | || || ||| || || || ||||| || || ||| Sbjct 84632840 CCTCCCCTGAGACGGAGCACAAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGCA 84632899 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| || || || |||||||||||| | || | | ||||| || || || Sbjct 84632900 AGCGTGCGCCCGTCCTCAAGCTGTTTGCCAGCAAAGATGAGCCGCTGCTGGTCTGGGGGG 84632959 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || || || | || | |||||||| || || Sbjct 84632960 ATGCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCAATGGTGTCAGACGACTCCACC 84633019 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || ||||| |||||||| | |||||| ||||| |||||||| Sbjct 84633020 TCGAGGGTGATAGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 84633066 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||| | ||||||||||| || || ||| || || || ||||| || || ||| Sbjct 84632384 CCTCCCCTGAGGCGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCA 84632443 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| || || || || || |||||| | || | | ||||| || || ||| Sbjct 84632444 AGCGTGCGCCCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGCCGCTGCTGGTCTGGGGGA 84632503 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || ||||| | || | ||||| ||| || || Sbjct 84632504 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCTGAAGACTCCACC 84632563 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || ||||| ||||| || | ||| || || || |||||||| Sbjct 84632564 TCGAGGGTGATAGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 84632610 >seq7 Length=182381542 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| ||||| | | || ||||||||||| || || || ||||| ||||| || || || Sbjct 119802357 TCCACCCCTAAGCCTGAGGACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAGTCAGC 119802298 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | ||||| ||| || || || |||||||| |||||| || || ||||| || || Sbjct 119802297 CAGCGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAATATCAGTCGCTGTTGATCTGGGGG 119802238 Query 29679 AATACCCTCTTTGTCTTGT 29697 ||| || || ||||| ||| Sbjct 119802237 AATCCCTTCCTTGTCCTGT 119802219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385217946472647