Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq5 87.8 2e-12 seq1 82.4 1e-10 >seq5 Length=223902240 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 193440 CGTATACCTGAAATAGGGGATAAATTTTGTT-CAGGAATGGCCCAAAAAGGAACTTGTGG 193498 || ||||| |||| || || || ||| | |||| |||| | ||||||||||| ||| Sbjct 17284046 CGCATACCACAAATTGGCGACAAGTTTAGCAGCAGGCATGGAC-AAAAAGGAACTGTTGG 17283988 Query 193499 TATGATTTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTAT 193558 |||| ||| | ||||| |||||||||| ||| ||| || ||| |||||||| Sbjct 17283987 GATGACTTACACTCAAGAGGATATGCCATGGACAATCGAAGGCATTACACCTGATATTAT 17283928 Query 193559 TATTAATCCAAATTGTATTCCATCCAGAATGACCATT 193595 | | |||||| || |||||||||| | ||||| ||| Sbjct 17283927 TGTGAATCCACATGCTATTCCATCCCGTATGACTATT 17283891 >seq1 Length=307041717 Score = 82.4 bits (90), Expect = 1e-10 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 193440 CGTATACCTGAAATAGGGGATAAATTTTGTTC-AGGAATGGCCCAAAAAGGAACTTGTGG 193498 || ||||| |||| || || || ||| | ||| |||| | ||||||||||| ||| Sbjct 254671867 CGAATACCACAAATTGGAGACAAGTTTAGCAGTAGGCATGGAC-AAAAAGGAACTGTTGG 254671809 Query 193499 TATGATTTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTAT 193558 |||| ||| | ||||| |||||||||| ||| ||| || ||| |||||||| Sbjct 254671808 GATGACTTACACTCAAGAGGATATGCCATGGACAATCGAAGGCATCACACCTGATATTAT 254671749 Query 193559 TATTAATCCAAATTGTATTCCATCCAGAATGACCATT 193595 | | |||||| || |||||||||| | ||||| ||| Sbjct 254671748 TGTGAATCCACATGCTATTCCATCCCGTATGACTATT 254671712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635175480094760