Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1 109 4e-18 seq2 107 1e-17 seq10 105 5e-17 seq3 100 2e-15 seq5 93.3 3e-13 seq82 89.7 4e-12 >seq1 Length=307041717 Score = 109 bits (120), Expect = 4e-18 Identities = 148/205 (72%), Gaps = 6/205 (3%) Strand=Plus/Minus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT-TGGTT 282333 ||||| ||| ||||| || | ||||| || || |||||| | || | | ||||| Sbjct 155961896 ACATCGAAGGTACCACCTCCAAGGTCAAAGATGAGGACATTCTTCTCACCGACGCTGGTT 155961837 Query 282334 T-----TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAA 282388 || ||||||||||| |||| ||||||||| ||||| ||||| || || | || Sbjct 155961836 GCCTTCTTGTCAAGACCATAGGCAATAGCAGCAGCGGTTGGCTCATTGATGATACGCAGC 155961777 Query 282389 ACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAA 282448 ||||| || |||||||| || ||||| || ||||| || || ||||| ||||| || Sbjct 155961776 ACATTGAGGCCAGCAATCACCCCAGCATCCTTCGTGGCCTGCCTCTGTGAGTCGTTGAAG 155961717 Query 282449 TATGCAGGAACAGTAATAACGGCAT 282473 || ||||| || || | ||| |||| Sbjct 155961716 TAGGCAGGGACCGTGACAACAGCAT 155961692 Score = 91.5 bits (100), Expect = 1e-12 Identities = 145/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 282274 AACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTT 282333 |||||| ||| ||||| || | ||||||| || | | |||| |||| | | Sbjct 268001001 AACATCGAAGGTGCCACCTCCGAGGTCAAAAACCAGAA---TTGTTTCATTGTTCT---T 268000948 Query 282334 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 282393 ||| |||| |||||| || | | || || || || ||||| ||||| | || ||| | Sbjct 268000947 TTTCTCAAAACCATATGCTAGTGATGCGGCGGTAGGCTCATTTATAATACGCAGAACCTC 268000888 Query 282394 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 282453 || |||||||| | || |||||||| || ||| |||||||||||||| || || || Sbjct 268000887 CAGCCCAGCAATGCGGCCAGCATCTTTGGTTGCTGTCCTTTGTGAATCGTTGAAGTAAGC 268000828 Query 282454 AGGAACAGTAATAACGGCATCTGTTAC 282480 ||| || || || || || | ||| || Sbjct 268000827 AGGGACTGTGATCACTGCCTTTGTGAC 268000801 >seq2 Length=244442276 Score = 107 bits (118), Expect = 1e-17 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| | ||||| |||||||| || ||||| ||||| |||| ||| | || |||||| Sbjct 195894957 CCATAAGACAAAGCTGCAGCAGTGGGCTCATTGATAATCCTCATAACTTCCAGTCCAGCA 195895016 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || || || ||||| || || || || | ||| | ||| |||||||| || || |||||| Sbjct 195895017 ATCCTACCAGCATCCTTGGTAGCCTGGCGTTGAGCATCATTAAAATAAGCTGGGACAGTA 195895076 Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTA 282520 ||||| || | | ||| || |||| ||||| ||| |||| ||||| ||| Sbjct 195895077 ATAACAGCCTTAGAGACTGTCTTGCCAAGGTAAGCCTCTGCAGTTTCCTTCATCTTA 195895133 >seq10 Length=150982314 Score = 105 bits (116), Expect = 5e-17 Identities = 146/203 (72%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 282334 |||||| |||||| || |||| |||||| | || | | |||| || | || | Sbjct 22240687 ACATCAAAGGTTCCGCCTCCCAAATCAAACACTAGAA---TTGTTTCATTATTTT---TC 22240634 Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || || | |||||| || || | ||||||||||||||||||||||| | | ||| | Sbjct 22240633 TTCTCGAAACCATAGGCCAACGATGCAGCAGTTGGTTCATTAATAATACGGAGAACTTCC 22240574 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 || || ||||| | || ||||||||||| ||| ||||||||||| || || ||||| Sbjct 22240573 AGTCCTGCAATGCGGCCAGCATCTTTAGTTGCTGTCCTTTGTGAATCATTGAAGTATGCT 22240514 Query 282455 GGAACAGTAATAACGGCATCTGT 282477 || || |||| || || | ||| Sbjct 22240513 GGGACTGTAACCACTGCTTTTGT 22240491 >seq3 Length=235667834 Score = 100 bits (110), Expect = 2e-15 Identities = 146/205 (71%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT-TGGT- 282332 |||||| ||| ||||| || | |||||| || || |||||| | || | | |||| Sbjct 126863582 ACATCAAAGGTACCACCTCCAAGATCAAAGATGAGGACATTCTTCTCACCGACACTGGTA 126863641 Query 282333 ----TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAA 282388 | || ||||||||||| || | ||| ||||| ||||| || || || || | || Sbjct 126863642 GCCTTCTTGTCAAGACCATAGGCGATAGCTGCAGCTGTTGGCTCGTTGATGATACGCAGC 126863701 Query 282389 ACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAA 282448 |||||||| |||||||| || ||||| || ||||| || || ||||| || || || Sbjct 126863702 ACATTAAGGCCAGCAATCACCCCAGCATCCTTTGTGGCCTGCCTCTGTGAGTCATTGAAG 126863761 Query 282449 TATGCAGGAACAGTAATAACGGCAT 282473 || ||||| || || | || |||| Sbjct 126863762 TAGGCAGGGACTGTGACCACAGCAT 126863786 Score = 96.9 bits (106), Expect = 3e-14 Identities = 144/203 (71%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 282334 |||||| ||| ||||| |||| |||||| | || | | |||| || | || | Sbjct 98751629 ACATCAAAGGTACCACCTCCCAAATCAAACACTAGAA---TTGTTTCATTATTTT---TC 98751576 Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || || | ||||| || || | ||||||||||||||||| ||||| | | ||| | Sbjct 98751575 TTCTCGAACCCATAGGCCAATGATGCAGCAGTTGGTTCATTTATAATACGGAGAACTTCC 98751516 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 || || ||||| | || ||||||||||| ||| ||||||||||| || || ||||| Sbjct 98751515 AGTCCTGCAATGCGGCCAGCATCTTTAGTTGCTGTCCTTTGTGAATCATTGAAGTATGCT 98751456 Query 282455 GGAACAGTAATAACGGCATCTGT 282477 || || |||| || || | ||| Sbjct 98751455 GGTACTGTAACCACTGCTTTTGT 98751433 >seq5 Length=223902240 Score = 93.3 bits (102), Expect = 3e-13 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| |||| |||||| || | | || || || || ||||| ||||| | || ||| Sbjct 12963414 TTTTTCTCAAAACCATATGCTAGTGATGCTGCGGTGGGCTCATTTATAATACGCAGAACC 12963473 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 | || |||||||| | || |||||||| || ||| |||||||||||||| || || Sbjct 12963474 TCCAGCCCAGCAATGCGGCCAGCATCTTTGGTTGCTGTCCTTTGTGAATCGTTGAAGTAA 12963533 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTT 282482 ||||| || || || || || | ||| |||| Sbjct 12963534 GCAGGGACTGTGATCACTGCCTTTGTGACTT 12963564 >seq82 Length=83778 Score = 89.7 bits (98), Expect = 4e-12 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| | | |||||| || || |||||||| || || || ||||| ||| |||||| Sbjct 72399 CCATAAGACAGAGCAGCTGCTGTAGGTTCATTGATGATCCTTTCAACATCAAGGCCAGCA 72458 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || | || ||||| || ||||| || | || | ||| || ||||| || ||||||||| Sbjct 72459 ATGCGACCAGCATCCTTTGTGGCCTGACGCTGAGCATCATTGAAATAAGCTGGAACAGTA 72518 Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATAAG 282497 || || || | || ||| ||| |||| |||| Sbjct 72519 ATCACTGCCTTTGAGACTGATTTGCCAAGGTAAG 72552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740617291428342