Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq4 116 7e-21 seq5 107 4e-18 >seq4 Length=246994605 Score = 116 bits (128), Expect = 7e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| ||| || || || | ||| || || || ||||| || || || || | Sbjct 242136400 TACCACCTCGCAAGCGGAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGG 242136341 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | || || || || || || ||||||||||| || | || || || || | Sbjct 242136340 CGAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGTG 242136281 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| ||||| ||||| || || || ||| | || | Sbjct 242136280 GAATGCCCTCCTTGTCCTGGATCTTGGCTTTGACATTATCGATTGTGTCAGACGACTCCA 242136221 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| || || |||||||| ||||| ||||| ||||| |||||||| Sbjct 242136220 CCTCCAAGGTGATGGTCTTGCCAGTCAATGTCTTCACAAAGATCTGCAT 242136172 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || || | |||||| || ||||| || || || ||||| || || ||||| | Sbjct 242135942 CCACCCCTGAGACGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCTGCA 242135883 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || || || || || ||||||||||| || | || || || || || Sbjct 242135882 AGGGTACGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCCGGTGGA 242135823 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| || || ||||| || || || || | || || Sbjct 242135822 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCCACC 242135763 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || ||||||||||| || | ||||| || || |||||||| Sbjct 242135762 TCAAGGGTGATCGTCTTGCCAGTAAGTGTCTTCACGAAGATCTGCAT 242135716 >seq5 Length=223902240 Score = 107 bits (118), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | ||||| || ||||| || || || ||||| || || || || | Sbjct 84632612 CCTCCCCTGAGGCGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCA 84632671 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||| || || || || ||||||||||| || | || || |||||||| Sbjct 84632672 AGCGTGCGCCCGTCCTCAAGCTGCTTCCCAGCAAAGATGAGCCGCTGCTGGTCTGGAGGG 84632731 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| || || || || ||||| || ||| | || || Sbjct 84632732 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGGACTCCACC 84632791 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| |||| || || ||||| |||||||| Sbjct 84632792 TCGAGGGTGATAGTCTTGCCGGTCAGGGTTTTCACAAAGATCTGCAT 84632838 Score = 107 bits (118), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | ||| || || | ||| || || || ||||| || || || |||| Sbjct 84632840 CCTCCCCTGAGACGGAGCACAAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGCA 84632899 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||| || || ||||| ||||||||||| || | || || ||||| || Sbjct 84632900 AGCGTGCGCCCGTCCTCAAGCTGTTTGCCAGCAAAGATGAGCCGCTGCTGGTCTGGGGGG 84632959 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| || || || || ||||| || ||| | || || Sbjct 84632960 ATGCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCAATGGTGTCAGACGACTCCACC 84633019 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| |||| || || ||||| |||||||| Sbjct 84633020 TCGAGGGTGATAGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 84633066 Score = 104 bits (114), Expect = 5e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | ||||| || ||||| || || || ||||| || || || || | Sbjct 84632384 CCTCCCCTGAGGCGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCA 84632443 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||| || || || |||||||||||||| || | || || ||||| || Sbjct 84632444 AGCGTGCGCCCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGCCGCTGCTGGTCTGGGGGA 84632503 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| || || || || || || || || || || || Sbjct 84632504 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCTGAAGACTCCACC 84632563 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| |||| ||||| || || |||||||| Sbjct 84632564 TCGAGGGTGATAGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 84632610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981823841230513