Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq9 98.7 2e-15 seq5 95.1 3e-14 seq8 93.3 1e-13 seq2 93.3 1e-13 seq1 93.3 1e-13 seq6 84.2 5e-11 seq4 84.2 5e-11 >seq9 Length=159769782 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||| | || || | ||||| |||| ||||| || || ||||| ||||| Sbjct 19195438 AAGACCCTCGCCGGCAAGAGCATCACCCTGGAGGTGGAGAGCTCGGACACGGTCGAGAAC 19195379 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || |||||| || | || |||||| Sbjct 19195378 GTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAGCGCCTCATCTTC 19195319 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | | |||||||| |||||| ||||||| ||||| Sbjct 19195318 GCCGGCAAGCAGCTGGACGACGGCCGCATCTTGGCCGACTACAACATCCAGAAGGAGTCC 19195259 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 19195258 ACGCTCCACCTCGT 19195245 >seq5 Length=223902240 Score = 95.1 bits (104), Expect = 3e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || || || || ||||| ||||| ||||| || |||||| Sbjct 84631923 CAGATTTTTGTGAAGACATTGACTGGCAAGACCATCACCTTGGAGGTGGAGAGCTCTGAC 84631864 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || || || ||| || ||| || Sbjct 84631863 ACCATTGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAG 84631804 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || |||||| |||| ||||| | ||| | || || |||||| || Sbjct 84631803 CGTCTGATCTTTGCGGGCAAGCAGCTGGAGGATGGCCGCACTCTCGCGGACTACAACATC 84631744 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||| ||| || |||||||||||| Sbjct 84631743 CAGAAGGAGAGCACCCTTCACCTTGTT 84631717 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || |||||||| || || |||| || || || || ||| Sbjct 84631695 CAGATCTTTGTAAAGACCCTGACTGGAAAAACCATAACCCTGGAGGTTGAGAGCTCGGAC 84631636 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || || |||||| || Sbjct 84631635 ACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAG 84631576 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| || ||| |||| ||||| | || | || || |||||| || Sbjct 84631575 CGTCTGATCTTCGCCGGCAAACAGCTGGAGGATGGCCGCACCCTAGCAGACTACAACATC 84631516 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 || || ||| || || |||||||| Sbjct 84631515 CAAAAGGAGAGCACCCTCCACCTTGT 84631490 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || ||||| || || || ||||| | || ||||| ||| || Sbjct 84632151 CAGATCTTTGTGAAGACACTCACTGGCAAGACAATCACCCTTGAGGTGGAGTCTTCGGAT 84632092 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || || || || || ||| || Sbjct 84632091 ACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCCGACCAGCAG 84632032 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| ||||| | || |||| ||||||||| || Sbjct 84632031 CGCCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCGGATTACAACATC 84631972 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||| ||||| ||||| || Sbjct 84631971 CAGAAGGAGAGCACTCTCCACCTGGT 84631946 >seq8 Length=181122637 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || ||||| ||||| ||||| ||||| || ||||| |||| Sbjct 176850029 AAGACCCTGACGGGGAAAACCATCACGTTGGAGGTGGAGTCCTCGGACACCATCGACAAC 176849970 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || ||||||| || | || |||||| Sbjct 176849969 GTGAAGGCCAAGATACAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGGCTCATCTTC 176849910 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || || || | || | ||||| |||||| ||||||| ||||| Sbjct 176849909 GCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCC 176849850 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 176849849 ACCCTCCACCTGGT 176849836 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| || ||||| |||| Sbjct 40272044 AAGACCCTGACGGGGAAGACCATCACGCTGGAGGTGGAGTCCTCGGACACCATCGACAAC 40272103 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || ||||||| || | || |||||| Sbjct 40272104 GTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGCCTCATCTTC 40272163 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || ||| | || ||||| | || | ||||| |||||| ||||||| ||||| Sbjct 40272164 GCCGGCAAACAGCTCGAGGATGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCG 40272223 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 40272224 ACGCTGCACCTGGT 40272237 >seq2 Length=244442276 Score = 93.3 bits (102), Expect = 1e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 206280 GCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGC 206339 ||||||| || |||| |||||||| || |||||| | ||||| || | || ||||| Sbjct 169842320 GCCGGACCAGCAGCGACTAATCTTCGCGGGGAAGCAGCTCGAAGACGGCCGCACCTTGGC 169842261 Query 206340 CGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| |||||| ||||||| ||||| || |||||||||||| | | ||||| Sbjct 169842260 CGACTACAACATCCAGAAGGAGTCCACCCTTCACCTTGTTCTTCGCCTTCG 169842210 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | | |||||||||||| || ||||| ||||||| || ||||| ||||| || Sbjct 169842210 CGAAGGCGAAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTG 169842269 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | || ||||| |||||||| || |||||||| || || || || Sbjct 169842270 CGGCCGTCTTCGAGCTGCTTCCCCGCGAAGATTAGTCGCTGCTG 169842313 >seq1 Length=307041717 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || || || ||||||||||| ||||| || ||| Sbjct 193515297 CAGATCTTTGTGAAGACTCTGACGGGGAAGACCATCACTTTGGAGGTGGAGTCCTCGGAC 193515238 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || || |||||| || Sbjct 193515237 ACCATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAG 193515178 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| | || || || | || | ||||| |||||| || Sbjct 193515177 CGGCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACCCTCGCCGACTACAACATC 193515118 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || ||||| || Sbjct 193515117 CAGAAGGAGTCCACACTCCACCTGGT 193515092 >seq6 Length=174033170 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || || || ||||||||||| ||||| || ||| Sbjct 129162169 CAGATCTTTGTGAAGACTCTGACGGGGAAGACCATCACTTTGGAGGTGGAGTCCTCCGAC 129162110 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || || || || |||||| || Sbjct 129162109 ACCATTGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAG 129162050 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| | || || || | || | ||||| |||||| | Sbjct 129162049 CGGCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACCCTCGCCGACTACAACATT 129161990 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || ||||| || Sbjct 129161989 CAGAAGGAGTCCACCCTCCACCTGGT 129161964 >seq4 Length=246994605 Score = 84.2 bits (92), Expect = 5e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || ||||| || || || ||||| | || ||||| ||||||| Sbjct 242112701 CAGATCTTTGTGAAGACCCTCACCGGCAAGACTATCACCCTCGAGGTGGAGTCTTCTGAC 242112760 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || || || || || ||| || Sbjct 242112761 ACCATTGACAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCAGCAG 242112820 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||||||||| |||||| | || || ||| | || | || || |||||| || Sbjct 242112821 CGGCTTATCTTCGCCGGCAAGCAGCTTGAGGACGGACGCACACTTGCTGACTACAACATC 242112880 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| ||||| || || ||| Sbjct 242112881 CAGAAGGAGTCAACCCTCCAC 242112901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181816757064907