Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq6 114 1e-20 seq8 111 1e-19 seq1 109 5e-19 seq5 93.3 4e-14 seq4 93.3 4e-14 >seq6 Length=174033170 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||| | || | |||| || | || || || || ||||| ||||||||| Sbjct 129161945 GCCACCGCGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGC 129162004 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | |||| |||| |||||||| || |||||| | ||||| ||||| || ||||| || Sbjct 129162005 GAGGGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGGGG 129162064 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || ||||||| |||| | || | ||||| | || || || Sbjct 129162065 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCGGAGGACTCCAC 129162124 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | ||| || | || ||||||||||| ||||||||||| ||||| Sbjct 129162125 CTCCAAAGTGATGGTCTTCCCCGTCAGAGTCTTCACAAAGATCTGCAT 129162172 >seq8 Length=181122637 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||| || | ||| || || || || || ||||||||| | | |||| | || ||| Sbjct 40272237 ACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCG 40272178 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 |||||||| |||||| | ||||| ||||| || |||||||| | ||||| || || | Sbjct 40272177 AGCTGTTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGG 40272118 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| |||| | | || | ||||| | || || || || || || || | || Sbjct 40272117 ATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTC 40272058 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||||||| || ||||| ||||| ||||| Sbjct 40272057 CCCGTCAGGGTCTTCACGAAGATCTGCAT 40272029 >seq1 Length=307041717 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||| | || | |||| || | || || || || || || ||||||||| Sbjct 193515073 GCCGCCGCGGAGGCGGAGCACCAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGC 193515132 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | |||| |||| |||||||| || |||||| | ||||| ||||| || ||||| || Sbjct 193515133 GAGGGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGGGG 193515192 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || ||||||| |||| | || | ||||| | || || || Sbjct 193515193 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCCGAGGACTCCAC 193515252 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | ||| || | || ||||||||||| ||||||||||| ||||| Sbjct 193515253 CTCCAAAGTGATGGTCTTCCCCGTCAGAGTCTTCACAAAGATCTGCAT 193515300 >seq5 Length=223902240 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| | | |||| ||||| || | || || || || || ||||||||| Sbjct 84632610 TGCCTCCCCTGAGGCGCAGCACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGG 84632669 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | ||||| |||| || ||||| || || || | ||||| ||||| || || || | Sbjct 84632670 CAAGCGTGCGCCCGTCCTCAAGCTGCTTCCCAGCAAAGATGAGCCGCTGCTGGTCTGGAG 84632729 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||||||| || | | | || | ||||| | || || | Sbjct 84632730 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGGACTCCA 84632789 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || |||| ||||| ||||| |||||||||||||| ||||| Sbjct 84632790 CCTCGAGGGTGATAGTCTTGCCGGTCAGGGTTTTCACAAAGATCTGCAT 84632838 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 27057 TCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAA 27116 || || || || |||||||| | ||||| |||| || |||||||| || || | Sbjct 84632876 TCCTTCTGGATGTTGTAGTCAGCAAGCGTGCGCCCGTCCTCAAGCTGTTTGCCAGCAAAG 84632935 Query 27117 ATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTT 27176 ||||| ||||| || || || || | ||||| || || ||||||| || | | | Sbjct 84632936 ATGAGCCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTG 84632995 Query 27177 TCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACA 27236 || | ||||| | | || || || || || |||| ||||| ||||| ||||||||| Sbjct 84632996 TCAATGGTGTCAGACGACTCCACCTCGAGGGTGATAGTCTTGCCAGTCAGGGTTTTCACA 84633055 Query 27237 AAGATTTGCAT 27247 ||||| ||||| Sbjct 84633056 AAGATCTGCAT 84633066 >seq4 Length=246994605 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 27057 TCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTA 27115 || || || || |||||||| ||| | | |||| | || || ||||| || |||||| | Sbjct 242136590 TCCTTCTGGATGTTGTAGTCTGCT-AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAA 242136532 Query 27116 AATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGT 27175 || |||||||| || || || || | |||||||| || |||||| |||| | | Sbjct 242136531 GATCAGACGCTGCTGGTCTGGGGGGATGCCCTCTTTGTCCTGGATCTTCGCCTTCACGTT 242136472 Query 27176 TTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCAC 27235 || | ||||| | | ||||| || || ||||| | ||||| |||| || ||||| Sbjct 242136471 GTCGATGGTGTCGGAGCTCTCAACCTCCAGGGTTATGGTCTTGCCAGTCAAGGTCTTCAC 242136412 Query 27236 AAAGATTTGCATA 27248 |||||| |||||| Sbjct 242136411 AAAGATCTGCATA 242136399 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 27057 TCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAA 27116 || || || ||||||||||| | | |||| | || || ||||| || |||||| | Sbjct 242113800 TCCTTCTGGATATTGTAGTCTGCAAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAG 242113741 Query 27117 ATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTT 27176 || |||||||| || || || || | ||||| || || |||||| |||| | | Sbjct 242113740 ATCAGACGCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTGGATCTTAGCCTTCACGTTG 242113681 Query 27177 TCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACA 27236 || | ||||| | | ||||| || || ||||| | ||||| |||| || |||||| Sbjct 242113680 TCGATGGTGTCAGAGCTCTCAACCTCCAGGGTTATGGTCTTGCCAGTCAAGGTCTTCACA 242113621 Query 27237 AAGATTTGCATA 27248 ||||| |||||| Sbjct 242113620 AAGATCTGCATA 242113609 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 27057 TCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAA 27116 || || ||||| ||||| || | | |||| | || || ||||| || ||||| | Sbjct 242113344 TCCTTCTGAATGTTGTAATCCGCAAGGGTGCGTCCATCCTCCAGCTGCTTGCCGGCAAAG 242113285 Query 27117 ATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTT 27176 || |||||||| || |||||||| | ||||| || || ||||||| || | | Sbjct 242113284 ATAAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTG 242113225 Query 27177 TCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACA 27236 || | || |||| | || || || ||||| || | ||||| || || ||||||||| Sbjct 242113224 TCAATGGTATCTGAAGACTCCACCTCAAGAGTGATGGTCTTGCCAGTAAGGGTTTTCACA 242113165 Query 27237 AAGATTTGCATA 27248 ||||| |||||| Sbjct 242113164 AAGATCTGCATA 242113153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424933017236904