Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq6 140 4e-28 seq2 114 2e-20 seq9 111 2e-19 >seq6 Length=174033170 Score = 140 bits (154), Expect = 4e-28 Identities = 249/362 (69%), Gaps = 6/362 (2%) Strand=Plus/Minus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 |||||||||||||| || | | || ||||| || || |||||||| ||||| | | Sbjct 86009151 AAGCCATCCATCTCCGTCAAGAGCTGGTTAATGGTCTGCTCTCTCTCGTCATTACC---C 86009095 Query 11600 ATACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 |||| || |||| ||| ||| | || || |||||||||||||||||||||||||| Sbjct 86009094 CCACCAAGTCCGGCACCGCGCTGCCTTCCAACGGCATCAATCTCATCAATGAAGACAATG 86009035 Query 11657 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716 || || || | ||| | || ||||| ||||| ||||| |||||| ||||| Sbjct 86009034 CAGGGCGCCTTGGCCTTGGCCTTCTCGAAGAGGTCGCGCACCCTGGAGGCACCGACACCG 86008975 Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCC 11776 || || | ||| || || | | ||||| ||| || ||| || || | || || Sbjct 86008974 ACGAAGAGCTCGACGAACTCAGAGGCAGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCA 86008915 Query 11777 GCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCT 11836 |||| ||| || || ||||||||||| || || || ||| || |||| || || Sbjct 86008914 GCGACGGCACGCGCAAGGAGGGTCTTCCCGGTCCCAGGCGGGCCGACGAGGAGACAACCC 86008855 Query 11837 CGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATC 11896 |||||||||||| || | || | ||||| | |||||| |||||||| | | Sbjct 86008854 TTGGGGATCTTGGCTCCGAGCGCGGTGTACTTGTCGGGGTTCTTGAGGAAATCCACGACC 86008795 Query 11897 TC 11898 || Sbjct 86008794 TC 86008793 Score = 123 bits (136), Expect = 3e-23 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || ||||| || ||||| || || || || |||||| || || |||||||| || Sbjct 122043152 GTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCC 122043093 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||||| |||| | || |||||||| || || ||||||||||| ||||| || || Sbjct 122043092 GCGCTTCTTCAGCCAAAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCA 122043033 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 || || |||| ||||| ||||||||| Sbjct 122043032 GGCGAAGGCAACGAGGCGCTCGGCGAAG 122043005 Score = 122 bits (134), Expect = 1e-22 Identities = 196/282 (70%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511 ||||||||| || || | ||| | ||| ||| | || || | || |||||||| || Sbjct 95645589 ATCAAAACGCCCAGGTCTAAGTAAAGCGGAATCCAATATGTCAGCCCGGTTAGTGGCAGC 95645648 Query 11512 AATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAAT 11571 |||||| | ||| ||||| | || || ||||||||||| || |||| |||||| | Sbjct 95645649 AATAACAATAATTCCAGTGTTGCCCTCGAAACCATCCATCTCAGTTAGTAGTTGATTGAG 95645708 Query 11572 TGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCACCGC 11631 || || || || ||||||||| | | ||| | || | |||| | || || || Sbjct 95645709 AGTCTGCTCCCTTTCATCATTTCCACCACCAATACCTGTACCTCTTTGCCTTCCAACAGC 95645768 Query 11632 ATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATC 11691 |||||| ||||||| || || || || || ||| || ||| | | || || || Sbjct 95645769 ATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAAAGGTC 95645828 Query 11692 GCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 ||||| || || || ||||||||||||||||||||||| Sbjct 95645829 ACGAACTCTGGAAGCTCCAACACCAACAAACATCTCCACAAA 95645870 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || || ||||| ||||| ||||| || ||||||| ||| || | ||| | ||| Sbjct 84115941 TGGGGCCTCGGTGTGCCAGCGTTGAAAAGTGTTGGTGATGCATGTGTAAACCAGCGCTGG 84116000 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| | ||| ||| | | |||| |||||||||||| ||| || || | || Sbjct 84116001 GACATCAGATGGTACGTCCTAATGGCAGACTCAATGTCTTCCTTGTGTATTCCCACTGAA 84116060 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA--T 112118 |||| ||| | ||||| ||| || |||| | || | ||| | ||| || |||| | Sbjct 84116061 ACCCTCATCAGCATGTGCTGAGGCCTTTCAACGACCTTCCCACCAAGC--TTCAAGAGGT 84116118 Query 112119 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 | | |||| || ||||||| |||||||| Sbjct 84116119 AAGACCTCTCCAGAGTTTTGAAGCCAAAGTA 84116149 >seq2 Length=244442276 Score = 114 bits (126), Expect = 2e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| ||||| || ||||| || || ||||| ||||| || || |||||||| || Sbjct 34131129 GTGGAGGCCCTCGTCCCGGGAGATGAGCTCATTAGAGAAAGTGAGGCCCGGCATGAGGCC 34131070 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || |||||||| || || ||||||||||| ||||| || || Sbjct 34131069 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCA 34131010 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 || || |||| ||||| ||||| ||| Sbjct 34131009 GGCGAAGGCAACGAGGCGCTCGGCAAAG 34130982 >seq9 Length=159769782 Score = 111 bits (122), Expect = 2e-19 Identities = 193/281 (69%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 ||||| || || || | ||| | ||| ||| | ||| || | || |||||||| ||| Sbjct 113593984 TCAAAGCGCCCAGGTCTAAGTAAAGCGGAATCCAAGATGTCAGCTCGGTTAGTGGCAGCA 113594043 Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572 ||||| | ||| || || | ||||| ||||||||||| || |||| |||||| | Sbjct 113594044 ATAACAATAATTCCGGTGTTGCCCTCAAAACCATCCATCTCAGTTAGTAGTTGATTTAGA 113594103 Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCACCGCA 11632 || || || || ||||||||| | | ||| | || | |||| | || || ||| Sbjct 113594104 GTCTGCTCCCTTTCATCATTTCCACCACCAATACCTGTACCTCTTTGCCTTCCAACAGCA 113594163 Query 11633 TCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCG 11692 ||||| ||||| | || || || || || || || ||| | | || || || Sbjct 113594164 TCAATTTCATCGACAAACACTATGCAAGGAGCGTTCTCCTTGGCCTTCTTGAAAAGGTCA 113594223 Query 11693 CGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 || || || ||||| ||||||||||||||||||||||| Sbjct 113594224 CGTACTCTGGAAGCACCAACACCAACAAACATCTCCACAAA 113594264 Score = 82.4 bits (90), Expect = 1e-10 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || || || || ||||||||||| || || |||| || ||| | ||| | ||| Sbjct 15725217 TGGGGCCTCGGCGTGCCAGCATTGAAAAGCGTCGGTGAAGCATGAGTAAACCAGCGCTGG 15725158 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| | ||| ||| | | |||| || ||||||||| ||| || || | || Sbjct 15725157 GACATCAGATGGTACGTCCTGATGGCAGACTCGATGTCTTCCTTGTGTATCCCCAGTGAA 15725098 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA--AGAT 112118 |||| ||| ||||||| ||| || |||| | || | ||||| ||| || | || | Sbjct 15725097 ACCCTCATTAACATGTGCTGCGGCCTTTCAACGACCTTACCATCAAGC--TTCAACAGGT 15725040 Query 112119 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 | | |||| || ||||||| |||||||| Sbjct 15725039 AAGACCTCTCCAGAGTTTTGAAGCCAAAGTA 15725009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628029903943200