Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq9 149 8e-31 seq6 149 8e-31 seq2 141 1e-28 >seq9 Length=159769782 Score = 149 bits (164), Expect = 8e-31 Identities = 309/451 (69%), Gaps = 8/451 (2%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| || || ||||||||||||||||| |||||||| || ||| |||||| Sbjct 30987751 TAGTCACCCACGCGCTTCTCGAAGAAGTTGGTCTTCCCCATCAGCGAGATGAGCTCCATC 30987692 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 | || || || || | ||| | || | || |||| || | | |||| || || Sbjct 30987691 CAGTCGAAGGGATTGGTCACGTTGTACATCTTCTTGCAC-CCGAGCGCCATGAGCAGGCG 30987633 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG-GTTAC 129905 || | ||| | |||||||||| ||| || |||||| |||| ||| | || Sbjct 30987632 GTCGGCCACGAATTCAATGTACTGGCTCATGAGATCCCCGTTCATGCCGACGAGCGCGAC 30987573 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 | ||||| ||||| ||| |||| | ||| ||||| ||||| || ||||| || Sbjct 30987572 A-GGGAGGGCGTCGCAGACGAACTCGCGCTCGATGTCGACAGCGTCTGCGACGATCTCGC 30987514 Query 129966 GAATG--GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023 | | | | | ||| | || | | ||||| | | || | |||| ||| || || Sbjct 30987513 GTACGCGGGCCTCGT-CGAGCT-TGTTGCGGAGAAGCTCGTAGAGGAGGCAGGCGAAATC 30987456 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 |||||| ||||| || ||||||||||| || || |||||| || || |||||||| Sbjct 30987455 ACAGTGGAGGCCCTCATCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAG 30987396 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 || |||||||| | |||||| || || || || || || |||||||| || ||||| || Sbjct 30987395 CCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGACCCCGAGAAGAATATGCCCTCGAC 30987336 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 || ||||| |||| || |||||||| ||| Sbjct 30987335 GCAGGCGAAGGCAACGATGCGCTCAGCGAAG 30987305 Score = 96.9 bits (106), Expect = 4e-15 Identities = 192/282 (68%), Gaps = 2/282 (1%) Strand=Plus/Plus Query 14066 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 14125 |||||||| || || | || | ||| || | ||| ||| ||||| || || || Sbjct 113593984 TCAAAGCGCCCAGGTCTAAGTAAAGCGGAATCCAAGATGTCAGCTCGGTTAGTGGCAGCA 113594043 Query 14126 ATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 14185 || |||| || || || | | ||||| |||||||||||||| | |||||||| | Sbjct 113594044 ATAACAATAATTCCGGTGTTGCCCTCAAAACCATCCATCTCAGTTAGTAGTTGATTTAGA 113594103 Query 14186 GTTTGTTCGCGTTCATCATTCGCAGGCATACCACCCGCACTGCGTTGCTTACCGACGGCG 14245 || || || | ||||||||| || | ||| | || | |||| | || || || Sbjct 113594104 GTCTGCTCCCTTTCATCATTTCCACCACCAATACCTGTACCTCTTTGCCTTCCAACAGCA 113594163 Query 14246 TCAATTTCATCGATGAAAACGATACATGG-TTGATTTTCACGGGCAACTTCAAAGATATC 14304 ||||||||||||| || || || || || | | | | || | ||| ||| | || Sbjct 113594164 TCAATTTCATCGACAAACACTATGCAAGGAGCGTTCTCCTTGGCCTTCTTGAAA-AGGTC 113594222 Query 14305 TCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 14346 || ||||| ||||| ||||| ||||||||||||||||| Sbjct 113594223 ACGTACTCTGGAAGCACCAACACCAACAAACATCTCCACAAA 113594264 >seq6 Length=174033170 Score = 149 bits (164), Expect = 8e-31 Identities = 314/457 (69%), Gaps = 20/457 (4%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| || || ||||||||||||||||| ||||| || | || ||| |||||| Sbjct 122043451 TAGTCACCGACGCGCTTCTCGAAGAAGTTGGTCTTTCCCTGCAGCGAGATGAGCTCCATC 122043392 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 | || || ||||| | ||| | || | || |||| || | | |||| || || Sbjct 122043391 CAGTCGAAGGGGTTGGTCACGTTGTACATCTTCTTGCAC-CCGAGCGCCATGAGCAGGCG 122043333 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTT-AC 129905 || | ||| |||| ||||||| ||| || |||||| |||| |||| || Sbjct 122043332 GTCGGCCACGAACTCGATGTACTGGCTCATGAGGTCCCCGTTCATGCCGACGAGGGAGAC 122043273 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 | ||||| ||||| ||| |||| | ||| ||||| || || || ||||| | | Sbjct 122043272 A-GGGAGGGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCAGCGACGATCGTGC 122043214 Query 129966 GAATGGTCTCCGTGCCAGGTCTA--TTGC-GCAAAG----TCTT-GAAGAGTTCCACGGC 130017 | | | || ||| ||| | |||| || || || | || ||| || ||| Sbjct 122043213 GCACG-----CGGGCCTCGTCGAGCTTGCTGCGTAGGACATCGTAGAGGAGG--CA-GGC 122043162 Query 130018 AAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 130077 || || ||| || |||||||| ||||||||||| || || |||||| || || || Sbjct 122043161 GAAATCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGG 122043102 Query 130078 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 130137 |||||| || |||||||||| ||| || || || || || ||||| ||||||||||| || Sbjct 122043101 CATGAGCCCGCGCTTCTTCAGCCAAAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCC 122043042 Query 130138 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 ||| || || ||||| |||| ||| ||||| || ||| Sbjct 122043041 CTCGACGCAGGCGAAGGCAACGAGGCGCTCGGCGAAG 122043005 Score = 127 bits (140), Expect = 3e-24 Identities = 257/380 (68%), Gaps = 6/380 (2%) Strand=Plus/Minus Query 14051 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 14110 ||||||| || | |||||| | ||||| || ||||| ||| ||| || | ||| Sbjct 86009253 ACGGTGACCTGCCTATCAAATCTCCCTGGTCGTAGGAGCGCGGAGTCCAGCACATCGGGC 86009194 Query 14111 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 14170 | ||| || || || | |||| || || | | | | | |||||||||||||| ||| Sbjct 86009193 CTGTTGGTGGCGGCAAGCACAATGACACCGCTGTTGCCAGCGAAGCCATCCATCTCCGTC 86009134 Query 14171 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA---CCCGCACTG 14227 ||||| || || ||||| || || | || ||||| | | |||| || |||| | Sbjct 86009133 AAGAGCTGGTTAATGGTCTGCTCTCTCTCGTCATT---ACCCCCACCAAGTCCGGCACCG 86009077 Query 14228 CGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGG 14287 || ||| | || ||||| ||||| ||||| ||||| || || || || || | | Sbjct 86009076 CGCTGCCTTCCAACGGCATCAATCTCATCAATGAAGACAATGCAGGGCGCCTTGGCCTTG 86009017 Query 14288 GCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAA 14347 || || |||| || ||||| || |||||||||||| || || | ||| || || Sbjct 86009016 GCCTTCTCGAAGAGGTCGCGCACCCTGGAGGCACCGACACCGACGAAGAGCTCGACGAAC 86008957 Query 14348 TTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGG 14407 | | ||| | || || |||||| || | || || |||| ||| || || ||| Sbjct 86008956 TCAGAGGCAGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCAGCGACGGCACGCGCAAGG 86008897 Query 14408 AGGGTCTTCCCCGTCCCTGG 14427 ||||||||||| ||||| || Sbjct 86008896 AGGGTCTTCCCGGTCCCAGG 86008877 Score = 109 bits (120), Expect = 7e-19 Identities = 350/535 (65%), Gaps = 6/535 (1%) Strand=Plus/Plus Query 13896 GGATGGCACACTCATTGAGGAGGTTCGCCAAGTCGGCACCAGAGAAGCCCGTCGTTTGCT 13955 |||||||| |||||| | ||||| || | |||||| || |||||| | || || Sbjct 116995070 GGATGGCAGCCTCATTCATAAGGTTGGCAAGGTCGGCGCCGCTGAAGCCGGGGGTGCGCA 116995129 Query 13956 TTGCGATGGCGTGTAGCTTCACATCGTCAGCCAACTTCTTGTCTCGGGC-GTGGACACCC 14014 | || | | || ||| ||| ||| ||| | |||||| | | || ||| || | Sbjct 116995130 TGGCCACGACGCTGAGCGACACGTCGGGGTCCAGCCTCTTGT-TGGAGCTGTGTACCCTG 116995188 Query 14015 AAAATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTACGATCAAAGCGA 14074 | |||| ||| || ||||| || || || ||| ||| || || || ||||| Sbjct 116995189 AGGATCTCCTCCCGCCCGCGGACGTCAGGGAGCCCGACGCTGACCTGGCGGTCGAAGCGG 116995248 Query 14075 CCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACG 14134 || |||||||| || ||| |||| ||||| ||| |||||||| ||||||||||| ||| Sbjct 116995249 CCCGGGCGGAGCAGCGCGGCGTCGAGGATGTCAGGCCGGTTCGTGGCCGCGATGACGACG 116995308 Query 14135 ATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCG 14194 | || | || || || |||||||| |||| || || || | || || || Sbjct 116995309 ACTCCGCTGTCCCCGCTGAACCCGTCCATCTCCGTCAGCAGCTGGTTCAGCGTCTGCTCC 116995368 Query 14195 CGTTCATCATT-CGCAGGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTC 14253 || || || || | | || | |||| | ||| || || |||||||| || || Sbjct 116995369 CGCTCGTCGTTGCCCCCGCCGA-TGCCCGTGCCGCGCTGGCGGCCCACGGCGTCGATCTC 116995427 Query 14254 ATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCT 14313 |||||||| |||| || || || | ||| | |||| || ||||| | Sbjct 116995428 GTCGATGAAGACGAGGCACGGCGCGTTGGCCTTGGCCTTGTTGAAGAGGTCCCGCACCCG 116995487 Query 14314 CTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGG 14372 | || || || || || |||||||| | || | || ||| ||| | || ||| | Sbjct 116995488 CGACGCGCCCACGCCGACGAACATCTCGATGAACTCGGACCCGG-ACAGAGAGAAGAAAG 116995546 Query 14373 GGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 | ||| | || ||||||||||| ||| || || ||||||||||| || || Sbjct 116995547 GCACGCCTGCCTCCCCCGCGATGGCCTTGGCCAGCAGCGTCTTCCCCGTGCCCGG 116995601 Score = 87.8 bits (96), Expect = 2e-12 Identities = 214/319 (67%), Gaps = 4/319 (1%) Strand=Plus/Plus Query 14111 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 14170 ||||| || || || || |||| || || || | | || || |||||||||||||| Sbjct 95645635 CGGTTAGTGGCAGCAATAACAATAATTCCAGTGTTGCCCTCGAAACCATCCATCTCAGTT 95645694 Query 14171 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCACCCGCACTGCGT 14230 | |||||||||| || || || | ||||||||| || | ||| | || | | Sbjct 95645695 AGTAGTTGATTGAGAGTCTGCTCCCTTTCATCATTTCCACCACCAATACCTGTACCTCTT 95645754 Query 14231 TGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATT-TTCACGGGC 14289 ||| | || || || ||||||||||| | || || || || || ||| | | || | Sbjct 95645755 TGCCTTCCAACAGCATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCC 95645814 Query 14290 AACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATT 14349 ||| ||| | || || ||||| || || ||||| ||||||||||||||||| | Sbjct 95645815 TTCTTGAAA-AGGTCACGAACTCTGGAAGCTCCAACACCAACAAACATCTCCACAAATTC 95645873 Query 14350 GGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGA 14408 | | ||| |||| || || || ||| || || || || || || ||| || | Sbjct 95645874 AGAACCTGAA-ATTGAGAAAAATGGCACGCCAGCCTCTCCTGCAATTGCCTTGGCAAGCA 95645932 Query 14409 GGGTCTTCCCCGTCCCTGG 14427 || || |||||||| || Sbjct 95645933 AAGTTTTACCCGTCCCAGG 95645951 >seq2 Length=244442276 Score = 141 bits (156), Expect = 1e-28 Identities = 120/148 (81%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 |||||| |||||||| ||||||||||| ||||| ||||| || || |||||||| || Sbjct 34131129 GTGGAGGCCCTCGTCCCGGGAGATGAGCTCATTAGAGAAAGTGAGGCCCGGCATGAGGCC 34131070 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||| | |||||| || || || || ||||| ||||||||||| ||||| || || Sbjct 34131069 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCA 34131010 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAG 130174 ||||| |||| ||| ||||| |||||| Sbjct 34131009 GGCGAAGGCAACGAGGCGCTCGGCAAAG 34130982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618433135972520