Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq6 141 1e-28 seq9 136 5e-27 seq2 136 5e-27 >seq6 Length=174033170 Score = 141 bits (156), Expect = 1e-28 Identities = 120/148 (81%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| ||| | || || || || || ||||| ||||||||||| || ||||| Sbjct 122043005 CTTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 122043064 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | |||||| |||||||| || |||||||| || ||| |||||||||||| Sbjct 122043065 CTGCGCCATCTTTTGGCTGAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 122043124 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| ||||| || |||||||| || ||| Sbjct 122043125 GCTCATCTCCCGCGACGAGGGCCTGCAC 122043152 Score = 109 bits (120), Expect = 6e-19 Identities = 273/411 (66%), Gaps = 18/411 (4%) Strand=Plus/Minus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 |||||| | ||||| || ||||||||| || || | ||| | || || ||||| Sbjct 86009239 ATCAAATCTCCCTGGTCGTAGGAGCGCGGAGTCCAGCACATCGGGCCTGTTGGTGGCGGC 86009180 Query 9586 GATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 | |||| | ||| |||| | | | || ||||||||||| ||||| || |||||| Sbjct 86009179 AAGCACAATGACACCGCTGTTGCC--AGCGAAGCCATCCATCTCCGTCAAGAGCTGGTTA 86009122 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9700 || || || || | || ||||| | | |||| || |||| ||| ||| |||| Sbjct 86009121 ATGGTCTGCTCTCTCTCGTCATTACC---CCCACCAAGTCCGGCACCGCGCTGCCTTCCA 86009065 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACTTC 9756 |||||||||||||||||||||||||| ||||| || ||| || || | || Sbjct 86009064 ACGGCATCAATCTCATCAATGAAGACAATGCAGGGCGCCTTGGCCTTGGCCTTC----TC 86009009 Query 9757 AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGC 9816 ||||| || || || | ||| || ||||| || || | ||| || || | | ||| Sbjct 86009008 GAAGAGGTCGCGCACCCTGGAGGCACCGACACCGACGAAGAGCTCGACGAACTCAGAGGC 86008949 Query 9817 GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 9876 | || || |||||| || | || || || | ||| || || || || ||||| Sbjct 86008948 AGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCAGCGACGGCACGCGCAAGGAGGGTCTT 86008889 Query 9877 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 || || || ||| || ||||||| ||| || |||||||| || Sbjct 86008888 CCCGGTCCCAGGCGGGCCGACGAGGAGACAACCCTTGGGGATCTTGGCTCC 86008838 Score = 104 bits (114), Expect = 3e-17 Identities = 245/365 (67%), Gaps = 4/365 (1%) Strand=Plus/Plus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 |||||| || || || | ||| | ||| ||| | || ||| | || || || || || Sbjct 95645589 ATCAAAACGCCCAGGTCTAAGTAAAGCGGAATCCAATATGTCAGCCCGGTTAGTGGCAGC 95645648 Query 9586 GATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9645 || |||| ||| || || | || |||||||||||||| || | ||||| || | Sbjct 95645649 AATAACAATAATTCCAGTGTTGCCCTCGAAACCATCCATCTCAGTTAGTAGTTGATTGAG 95645708 Query 9646 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGC 9705 ||| || |||| ||||||||| | | ||| | || | |||| |||| || || Sbjct 95645709 AGTCTGCTCCCTTTCATCATTTCCACCACCAATACCTGTACCTCTTTGCCTTCCAACAGC 95645768 Query 9706 ATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGCGACTTCAAAGAGAT 9764 |||||| ||||||| || || ||||| || ||| | | | | ||| ||| || | Sbjct 95645769 ATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAA-AGGT 95645827 Query 9765 CCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATT 9824 | || || | || || ||||||||||||||||||||||| | | | ||| ||| Sbjct 95645828 CACGAACTCTGGAAGCTCCAACACCAACAAACATCTCCACAAATTCAGAACCTGAA-ATT 95645886 Query 9825 G-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTA 9883 | || || || || || || || ||||| || ||| || | ||| |||||||| Sbjct 95645887 GAGAAAAATGGCACGCCAGCCTCTCCTGCAATTGCCTTGGCAAGCAAAGTTTTACCCGTC 95645946 Query 9884 CCTGG 9888 || || Sbjct 95645947 CCAGG 95645951 >seq9 Length=159769782 Score = 136 bits (150), Expect = 5e-27 Identities = 119/148 (80%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| |||||||| || | || || || || || ||||| || |||||||| || ||||| Sbjct 30987305 CTTCGCTGAGCGCATCGTTGCCTTCGCCTGCGTCGAGGGCATATTCTTCTCGGGGTCCTT 30987364 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 30987365 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 30987424 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| ||||| || || ||||| |||||| Sbjct 30987425 GCTCATCTCCCGCGATGAGGGCCTCCAC 30987452 Score = 105 bits (116), Expect = 8e-18 Identities = 245/364 (67%), Gaps = 4/364 (1%) Strand=Plus/Plus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 |||||||| || || | ||| | ||| ||| | ||| ||| | || || || || || Sbjct 113593984 TCAAAGCGCCCAGGTCTAAGTAAAGCGGAATCCAAGATGTCAGCTCGGTTAGTGGCAGCA 113594043 Query 9587 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9646 || |||| ||| || || | ||||||||||||||||| || | ||||| || | | Sbjct 113594044 ATAACAATAATTCCGGTGTTGCCCTCAAAACCATCCATCTCAGTTAGTAGTTGATTTAGA 113594103 Query 9647 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCA 9706 || || |||| ||||||||| | | ||| | || | |||| |||| || ||| Sbjct 113594104 GTCTGCTCCCTTTCATCATTTCCACCACCAATACCTGTACCTCTTTGCCTTCCAACAGCA 113594163 Query 9707 TCAATCTCATCAATGAAGACGATGCATGG-TTGATTTTCGCGAGCGACTTCAAAGAGATC 9765 ||||| ||||| | || || ||||| || | | | | | | ||| ||| || || Sbjct 113594164 TCAATTTCATCGACAAACACTATGCAAGGAGCGTTCTCCTTGGCCTTCTTGAAA-AGGTC 113594222 Query 9766 CCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG 9825 ||||| | || || ||||||||||||||||||||||| | | | ||| |||| Sbjct 113594223 ACGTACTCTGGAAGCACCAACACCAACAAACATCTCCACAAACTCAGAACCTGAA-ATTG 113594281 Query 9826 -GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTAC 9884 || || || || || || || ||||| || ||| || | ||| ||||| || | Sbjct 113594282 AGAAAAATGGTACGCCAGCCTCTCCTGCAATTGCCTTGGCAAGCAAAGTTTTACCAGTCC 113594341 Query 9885 CTGG 9888 | || Sbjct 113594342 CAGG 113594345 >seq2 Length=244442276 Score = 136 bits (150), Expect = 5e-27 Identities = 119/148 (80%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 |||||| ||||| ||| | || || || || || ||||| ||||||||||| || ||||| Sbjct 34130982 CTTTGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 34131041 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | |||||||||||||| || |||||||| || ||| ||||| || || Sbjct 34131042 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACTTTCTCTAATGA 34131101 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| ||||| || |||||||| |||||| Sbjct 34131102 GCTCATCTCCCGGGACGAGGGCCTCCAC 34131129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583258853367080