Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2 214 2e-50 seq9 185 1e-41 seq6 185 1e-41 >seq2 Length=244442276 Score = 214 bits (236), Expect = 2e-50 Identities = 585/876 (67%), Gaps = 35/876 (4%) Strand=Plus/Plus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || || || ||||||||| | | |||| | || ||||| ||| | | || |||||| Sbjct 34130569 TTCCCGATCCGGTACCCGCAGATTTGGGAGTTCTACAAGAAGGCGGTGGCGTCCTTCTGG 34130628 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAG---CTCAATTAC 59678 | | ||||||| | |||||| ||| ||| | | |||||| | ||| | Sbjct 34130629 ACTGCCGAGGAGGTGGACCTCTCCGCGGACGCGCGCCACTGGGACGCGGCCCTCTCCCCC 34130688 Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 ||||||| || |||||| || || ||||||||||| || || || || ||| Sbjct 34130689 GACGAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTG 34130748 Query 59739 ATGGAAAATATAGACATGAACTTT---TCCAAGGATGTCCAGATTGCCGAGGCCCGGTCG 59795 | || || | | | ||| ||| ||||||||| | |||||||| || | Sbjct 34130749 CTCGAGAACCTCGCCTCCCGCTTCATGTCC---GATGTCCAGGTCGCCGAGGCGCGCGCC 34130805 Query 59796 TTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854 || |||| | || ||| || |||| |||||||| |||| ||||||||| || | Sbjct 34130806 TTTTACGGCTTCCAAATCGC-CATCGAGAACATCCACTCGGAGATGTACTCGCTGCTGCT 34130864 Query 59855 CGATAAGTTGGTCAAGGATCCGGAA--GAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG 59912 ||| | | || ||| || | ||||||| | || ||||| ||||| || || Sbjct 34130865 CGAGACCTACATCCGCGAT--GGCACCGAGAAGGACCGCCTCTTCCGCGCCATCGAAACC 34130922 Query 59913 TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GA-GTCCTGGAGCAT 59970 |||||| || | || || || |||||||||| ||||| || | | ||||| Sbjct 34130923 GTCCCCGCCGTACGCCGCAAGGCCGACTGGGCCATGCGCTGGATCGACGGCGGGGAGCGC 34130982 Query 59971 CATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGT 60030 ||||| | || ||| | || || || ||||| || || ||||||||||| ||||| | Sbjct 34130983 --TTTGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCT 34131040 Query 60031 TCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACG 60090 |||| || || ||||||||||| ||||| ||||||||||||||||| | |||||| || | Sbjct 34131041 TCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACTTTCTCTAATG 34131100 Query 60091 AGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACAC 60149 |||| || |||||||||||||||||||| || || || || | || ||| | | Sbjct 34131101 AGCTCATCTCCCGGGACGAGGGCCTCCACTGCGACTTCGC-CTGCCTCCTTTATGACCTC 34131159 Query 60150 CTATTGGAAAAATGCCCT---TCCAAGGATATTCACAAGATTGTT-CAGTGGGCTTGTGA 60205 || || || | | ||| | | | | |||| ||| | | | | | || Sbjct 34131160 CTTCGGGGCAAGCTCGATGAGTCCCGCG---TCCGCGAGATCGTTGCCGACGCCGT-CGA 34131215 Query 60206 AGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGG 60265 | ||| | |||||| | || ||||| || | || | || ||| ||| || Sbjct 34131216 CATCGAGCGTGAGTTCGTTTGCGACGCGCTCCCCGTCGCGCTGGTCGGAATGAACGGCGG 34131275 Query 60266 AGAAATGACGCAGTACATTCAGTTTGTCGCGGACCGC---CTCATGGCCCAGTTTGGAGA 60322 |||| |||||||| |||| ||||| |||||| |||||||| | | || Sbjct 34131276 GCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGC--TGGGGCAC 34131333 Query 60323 AGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGG 60382 |||| || ||| ||| ||||| ||||||||||||||| ||| || || | || Sbjct 34131334 AGGA-AGATGTACAACGTCGCCAACCCCTTCGACTGGATGGAGCTCATTTCCCTGCAGGG 34131392 Query 60383 GAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 ||||| ||||||||||||||||| |||||||| || Sbjct 34131393 CAAGACTAACTTCTTTGAGAAGCGCGTCGGGGAGTA 34131428 >seq9 Length=159769782 Score = 185 bits (204), Expect = 1e-41 Identities = 572/869 (66%), Gaps = 21/869 (2%) Strand=Plus/Plus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || || || || | |||| | | |||| | || ||||| ||| | | || |||||| Sbjct 30986892 TTCCCGATCCGTTTCCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCCTCCTTCTGG 30986951 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAG---CTCAATTAC 59678 | | |||||| |||||||| | | ||| | | |||||| || || | Sbjct 30986952 ACGGCGGAGGAGGTTGACCTCTCTGCCGACGCCCGGCACTGGGACGAGGCGCTGTCCCCC 30987011 Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 ||||||| ||| |||||| || || ||||||||||| || || || || ||| Sbjct 30987012 GACGAGCGGCACTTCATCTCCCACGTGCTCGCCTTCTTCGCTGCCTCCGACGGCATCGTG 30987071 Query 59739 ATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTC 59798 | || || | | ||| | || || ||| | |||||||| ||| | ||| Sbjct 30987072 CTCGAGAACCTCGCTTCCCGCTTCATGACCGACGTGCAGGTCGCCGAGGCGCGGGCCTTC 30987131 Query 59799 TACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGA 59857 |||| | ||| ||| || |||| |||||||| |||| ||| ||||| || |||| Sbjct 30987132 TACGGCTTCCAGATCGC-CATCGAGAACATCCACTCGGAGATGTATTCGCTGCTGCTCGA 30987190 Query 59858 TAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCC 59917 | | || || | | ||||||| | |||||||| ||||| || || || Sbjct 30987191 GACCTACATCCGCGACCACGTCGAGAAGGACCGCCTGTTCCGCGCCATCGACACCGTGCC 30987250 Query 59918 CGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GA-GTCCTGGAGCATCATTT 59975 ||| || | || || || |||||||||| ||||| || | | ||||| || Sbjct 30987251 CGCGGTCCGGCGCAAGGCTGACTGGGCCATGCGCTGGATCGACGGCGGGGAGCGC--TTC 30987308 Query 59976 GCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGT 60035 || | || || | || || || ||||| || || || |||||||| || || ||||| Sbjct 30987309 GCTGAGCGCATCGTTGCCTTCGCCTGCGTCGAGGGCATATTCTTCTCGGGGTCCTTCTGC 30987368 Query 60036 GCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTG 60095 || || ||||||||||| ||||| || |||||||||||||| | |||||||||||||| Sbjct 30987369 GCCATCTTCTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGAGCTC 30987428 Query 60096 ATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCACACCTATTG 60155 || ||||| || ||||||||||| || || || || | | || | | | | | Sbjct 30987429 ATCTCCCGCGATGAGGGCCTCCACTGTGATTTCGC-CTGCCTC-CTCTACGAGCTTCTCC 30987486 Query 60156 GAAAAATGCCCTTCCAAG--GATATTCACAAGATTGT-TCAGTGGGCTTGTGAAGTGGAG 60212 | || | || | | | | | | | |||| || ||| ||| || | ||| Sbjct 30987487 GCAACAAGCTCGACGAGGCCCGCGTACGCGAGATCGTCGCAG-ACGCTGTCGACATCGAG 30987545 Query 60213 AGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATG 60272 |||||||| || || || || || | ||| | || ||| ||| | ||| Sbjct 30987546 CGCGAGTTCGTCTGCGACGCCCTCCCTGTCGCGCTCGTCGGCATGAACGGGGATCTCATG 30987605 Query 60273 ACGCAGTACATTCAGTTTGTCGCGGACCGC---CTCATGGCCCAGTTTGGAGAAGGACCA 60329 | ||||||||| | || || || |||||| |||||||| | | || | | || Sbjct 30987606 AGCCAGTACATTGAATTCGTGGCCGACCGCCTGCTCATGGCGC--TCGGGTGCAAGA-AG 30987662 Query 60330 ATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACC 60389 || ||| ||||| || || ||||||||||||||| ||||||| || ||||||||| Sbjct 30987663 ATGTACAACGTGACCAATCCCTTCGACTGGATGGAGCTCATCTCGCTGATGGGGAAGACC 30987722 Query 60390 AACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 |||||||| |||||||| || || || || Sbjct 30987723 AACTTCTTCGAGAAGCGCGTGGGTGACTA 30987751 >seq6 Length=174033170 Score = 185 bits (204), Expect = 1e-41 Identities = 447/660 (68%), Gaps = 20/660 (3%) Strand=Plus/Plus Query 59769 GATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTAT 59827 || || ||| | |||||||| ||| | ||||||| | ||| ||| || |||| || Sbjct 122042802 GACGTGCAGGTCGCCGAGGCGCGGGCCTTCTACGGCTTCCAGATCGC-CATCGAGAACAT 122042860 Query 59828 CCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGC 59887 |||||| |||| ||||||||| || |||| | | || || | ||||||| Sbjct 122042861 CCACTCGGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGACGTCGAGAAGGA 122042920 Query 59888 TGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCAT 59947 | || ||||| ||||| || ||| ||||| || | || || || |||||||| Sbjct 122042921 CCGCCTCTTCCGCGCCATCGATACGGTGCCCGCGGTCCGGCGCAAGGCGGACTGGGCCAT 122042980 Query 59948 GCAGTGGAT-GA-GTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTG 60005 || ||||| || | | ||||| || || | || ||| | || || || ||||| Sbjct 122042981 GCGCTGGATCGACGGCGGGGAGCGC--TTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGTC 122043038 Query 60006 GAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTC 60065 || || ||||||||||| ||||| ||||| || || || ||||| || ||||| || ||| Sbjct 122043039 GAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTTTGGCTGAAGAAGCGCGGGCTC 122043098 Query 60066 ATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAG 60125 ||||||||||| | |||||||||||||| || ||||| ||||||||||| || || Sbjct 122043099 ATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGAT 122043158 Query 60126 TTTGCAGTGAC-GCTCTATTCACACCTATTGGAAAAATGCCCTTCCAAG--GATATTCAC 60182 || || || | ||||| |||| | | | || | | | | | | | Sbjct 122043159 TTCGC-CTGCCTCCTCTACGATGTCCTA--CGCAGCAAGCTCGACGAGGCCCGCGTGCGC 122043215 Query 60183 AAGATTGTTCAGTG-GGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATG 60241 | ||| | || || || || | ||| |||||||| || || || || || Sbjct 122043216 ACGATCG-TCGCTGACGCCGTCGACATCGAGCGCGAGTTCGTCTGCGACGCCCTCCCTGT 122043274 Query 60242 CAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCG 60301 | ||| | || ||| ||| | |||| |||||||| |||| || || ||||| Sbjct 122043275 CTCCCTCGTCGGCATGAACGGGGACCTCATGAGCCAGTACATCGAGTTCGTGGCCGACCG 122043334 Query 60302 C---CTCATGGCCCAGTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTG 60358 | |||||||| | | || | | || || ||| ||||| ||||| |||||||| Sbjct 122043335 CCTGCTCATGGCGC--TCGGGTGCAAGA-AGATGTACAACGTGACCAACCCCTTCGACTG 122043391 Query 60359 GATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 ||||||| ||||||| || | || |||||||||||||| |||||||| ||||| || || Sbjct 122043392 GATGGAGCTCATCTCGCTGCAGGGAAAGACCAACTTCTTCGAGAAGCGCGTCGGTGACTA 122043451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548522969298480