Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq1 82.4 6e-11 >seq1 Length=307041717 Score = 82.4 bits (90), Expect = 6e-11 Identities = 167/245 (68%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 48984 ACCCCGGTGGACCCGTACCCCGCGTCACCCCTGTCGGTAGAGTCCAGGCTGTCCACCTCC 49043 || |||||||||||| |||| |||| || | | |||| | ||| ||| ||||||||| Sbjct 262588407 ACGCCGGTGGACCCGAACCCTCCGTCCCCACGGACGGTGGCGTCGAGGTCCTCCACCTCC 262588466 Query 49044 AGAACGGGAGGAGACTCGTACCTCTCGAGCACGAGCTGGGCTATCCTGTCGCCCCTCTCG 49103 || || | | || | ||||| | | ||| || ||||||||||| || Sbjct 262588467 GCGACCTCGGGCGTCGCGATCACCTCGATGATCATCTGCGCGATCCTGTCGCCGGGCTTC 262588526 Query 49104 AC-CCGAA--AGGGGTCGCACCCAAAGTTAAACAGTATGACGCCGAGGTTGCCCCTGTAG 49160 || |||| || |||| | ||| || || |||||||||| | ||| | |||| Sbjct 262588527 ACGGCGAAGTCGGCGTCGGA---GTGGTTGAAGAGGATGACGCCGACGGGGCCTCGGTAG 262588583 Query 49161 TCGGGGTCCACCACCCCGGCACCGACGTCTATAAAATTTTTCAGGGCCAGGCCGGACCTG 49220 || | ||| | ||| ||||| || ||||| || | | ||||| ||||| || |||||| Sbjct 262588584 TCCGCGTCGATCACGCCGGCGCCCACGTCGATGGAGTGCTTCAGCGCCAGCCCCGACCTG 262588643 Query 49221 GGAGC 49225 || || Sbjct 262588644 GGCGC 262588648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406309077840564