Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq5 120 3e-22 seq4 120 3e-22 seq6 118 9e-22 seq8 89.7 4e-13 >seq5 Length=223902240 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||||||||||| |||| || || || ||||| | || Sbjct 84632383 CATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACTATCACCCTCGAGGTGGAGTCTTC 84632324 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | ||||| || || || ||||| || ||||| ||||| || || Sbjct 84632323 AGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCGGACCA 84632264 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||| || | ||| ||||| || |||| || | ||| || | |||||||| Sbjct 84632263 GCAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTGCGGATTACAA 84632204 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||| ||| | || |||| | ||| | ||||||| || Sbjct 84632203 CATCCAGAAGGAGAGCACCCTCCACCTGGTGCTCCGTCTCAGGGGTGGTAT 84632153 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| ||||| |||||||||||| |||| || || || ||||| | || Sbjct 84632839 CATGCAGATCTTTGTGAAAACCCTGACCGGCAAGACTATCACCCTCGAGGTGGAGTCCTC 84632780 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | ||||| || || || ||||| || ||||| || || || || Sbjct 84632779 TGACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCAGACCA 84632720 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | || || || || | || ||| | || || |||| ||||| Sbjct 84632719 GCAGCGGCTCATCTTTGCTGGGAAGCAGCTTGAGGACGGGCGCACGCTTGCCGACTACAA 84632660 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||| ||| | || ||||| |||| | |||| ||||| Sbjct 84632659 CATCCAGAAGGAGAGCACCCTCCACTTGGTGCTGCGCCTCAGGGGAGGCAT 84632609 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | || || ||||| ||||| | || Sbjct 84632154 ATGCAGATCTTTGTGAAGACACTCACTGGCAAGACAATCACCCTTGAGGTGGAGTCTTCG 84632095 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| || || || ||||| || ||||| |||||||| || Sbjct 84632094 GATACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCCGACCAG 84632035 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || |||| || | ||| | | ||||||||| Sbjct 84632034 CAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCGGATTACAAC 84631975 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||| || | || |||| | || | |||||||||| Sbjct 84631974 ATCCAGAAGGAGAGCACTCTCCACCTGGTGCTCCGCCTCAGGGGTGGCAT 84631925 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||||||||||| |||| || || || ||||| | || Sbjct 84632611 CATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACTATCACCCTCGAGGTGGAGTCTTC 84632552 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | ||||| || || || ||||| || ||||| || || || || Sbjct 84632551 AGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCA 84632492 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | || || || || | || ||| | || || |||| ||||| Sbjct 84632491 GCAGCGGCTCATCTTTGCTGGAAAGCAGCTTGAGGACGGGCGCACGCTTGCCGACTACAA 84632432 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||| ||| | || ||||| |||| | |||| ||||| Sbjct 84632431 CATCCAGAAGGAGAGCACCCTCCACTTGGTGCTGCGCCTCAGGGGAGGCAT 84632381 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| |||||||| || ||||| || || | || || || || || || || Sbjct 84631698 ATGCAGATCTTTGTAAAGACCCTGACTGGAAAAACCATAACCCTGGAGGTTGAGAGCTCG 84631639 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || ||||| || ||||| || || || || Sbjct 84631638 GACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 84631579 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||||||||| |||| || | ||| | | || |||||| Sbjct 84631578 CAGCGTCTGATCTTCGCCGGCAAACAGCTGGAGGATGGCCGCACCCTAGCAGACTACAAC 84631519 Query 27168 ATTCAAAAGGAG 27179 || ||||||||| Sbjct 84631518 ATCCAAAAGGAG 84631507 >seq4 Length=246994605 Score = 120 bits (132), Expect = 3e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || |||||||| |||||| |||| || ||||| || || | Sbjct 242135484 CGGCATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACTATCACCCTTGAGGTCGAGTC 242135543 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 || || | ||||| | ||||| || || || ||||| || ||||| || || || Sbjct 242135544 TTCTGATACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGA 242135603 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || ||||| | || | |||||||| || | || ||| | || || |||| || Sbjct 242135604 CCAGCAGCGGCTCATTTTTGCCGGCAAGCAGCTCGAGGACGGGCGCACGCTTGCCGACTA 242135663 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||| |||||| ||| | || ||||| ||||| | |||||||||| Sbjct 242135664 CAACATTCAGAAGGAGAGCACCCTCCACTTGGTGCTGCGTCTCAGGGGTGGCAT 242135717 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| || || |||||| | || |||||||| ||||| | || Sbjct 242113154 ATGCAGATCTTTGTGAAAACCCTTACTGGCAAGACCATCACTCTTGAGGTGGAGTCTTCA 242113213 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| || || || ||||| || ||||| || || || || Sbjct 242113214 GATACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 242113273 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||||| || |||| || | ||| || | ||||||||| Sbjct 242113274 CAGCGTCTTATCTTTGCCGGCAAGCAGCTGGAGGATGGACGCACCCTTGCGGATTACAAC 242113333 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG 27202 ||||| |||||| ||| | || |||| |||| Sbjct 242113334 ATTCAGAAGGAGAGCACCCTCCACCTGGTGCTGCG 242113368 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || |||||| | || || ||||| ||||| | || Sbjct 242135715 CATGCAGATCTTCGTGAAGACACTTACTGGCAAGACGATCACCCTTGAGGTGGAGTCCTC 242135774 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | ||||| || || || ||||| || ||||| ||||| || || Sbjct 242135775 GGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCACCGGACCA 242135834 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | || ||||| || |||| || | ||| || | |||||||| Sbjct 242135835 GCAGCGGCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGTACCCTTGCAGATTACAA 242135894 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||| ||| | || ||||| ||||| | |||||||||| Sbjct 242135895 CATCCAGAAGGAGAGCACCCTCCACTTGGTGCTGCGTCTCAGGGGTGGCAT 242135945 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || || ||| |||| || || || ||||| | || Sbjct 242135259 CATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACTATCACCCTCGAGGTGGAGTCTTC 242135318 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | ||||| || || || ||||| || ||||| || || || || Sbjct 242135319 TGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCA 242135378 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | || ||||| || | || ||| | || | |||| ||||| Sbjct 242135379 GCAGCGGCTCATTTTTGCTGGCAAGCAGCTCGAGGACGGGCGCACGCTGGCCGACTACAA 242135438 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| |||||| ||| | || ||||| |||||| | |||| ||||| Sbjct 242135439 CATTCAGAAGGAGAGCACCCTCCACTTGGTGTTGCGTCTCAGGGGCGGCAT 242135489 >seq6 Length=174033170 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || |||||||| || ||| | || ||| | || ||||| | ||| Sbjct 129162172 ATGCAGATCTTTGTGAAGACTCTGACGGGGAAGACCATCACTTTGGAGGTGGAGTCCTCC 129162113 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || || ||||| || ||||| || || || || Sbjct 129162112 GACACCATTGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 129162053 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || | || ||| || ||| | |||| |||||| Sbjct 129162052 CAGCGGCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACCCTCGCCGACTACAAC 129161993 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||| |||||||| ||| | || |||| | || | || |||||| Sbjct 129161992 ATTCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTCCGCGGTGGC 129161945 >seq8 Length=181122637 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| | || || || || ||||| | || Sbjct 40272029 ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACCATCACGCTGGAGGTGGAGTCCTCG 40272088 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || ||||| || ||||| || || || || Sbjct 40272089 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 40272148 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | |||||||||||| | || || | ||| | |||| |||||| Sbjct 40272149 CAGCGCCTCATCTTCGCCGGCAAACAGCTCGAGGATGGCCGCACCCTCGCCGACTACAAC 40272208 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || ||||||||||| Sbjct 40272209 ATCCAGAAGGAGTCGAC 40272225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434916948459840