Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq2 95.1 1e-14 >seq2 Length=244442276 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/139 (76%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 34603 CTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGA 34662 || ||| ||||| || | ||||||||||| || |||||| | |||||||| || | ||| Sbjct 228280526 CTTCCAGTTCTATGTGGAAAATGGGGAGCTATCTTGCCAGATGTATCAACGCTCTGCAGA 228280585 Query 34663 CATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGC 34722 ||||||| | || || || |||||||| || || |||| || || |||||||| || Sbjct 228280586 CATGGGGCTTGGTGTTCCATTCAACATCGCATCATATTCTCTCCTGACATACATGATTGC 228280645 Query 34723 TCATGTCGTGGGGTTGGTT 34741 ||| || || ||| |||| Sbjct 228280646 TCAAGT-TTGTGGTAGGTT 228280663 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/139 (76%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 6604 AACCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAA 6663 |||| ||| || || ||||| |||||||| || || |||| || || |||||||| Sbjct 228280663 AACCTACCACAA-ACTTGAGCAATCATGTATGTCAGGAGAGAATATGATGCGATGTTGAA 228280605 Query 6664 CGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATT 6723 || || || | |||||||||| | || |||||||| | |||||| || ||||||||||| Sbjct 228280604 TGGAACACCAAGCCCCATGTCTGCAGAGCGTTGATACATCTGGCAAGATAGCTCCCCATT 228280545 Query 6724 CGCGACGTAGAATTGGCAG 6742 | || ||||| ||| || Sbjct 228280544 TTCCACATAGAACTGGAAG 228280526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448260903924240