Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq4 84.2 2e-11 seq2 84.2 2e-11 >seq4 Length=246994605 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 118546 TGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCC 118605 ||||||||||| |||||||| | | || || | || || |||||||| || ||| Sbjct 19759954 TGAGCAATCATATATGTCAAAAGAGAATATGATGCGATGTTGAATGGAACACCAAGCCCC 19760013 Query 118606 ATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTG 118664 |||||||| || | || |||| ||||| || ||||||||||| | ||||||||||| Sbjct 19760014 ATGTCTGCAGAGCGTTGATACATCTGGCAGGATAGCTCCCCGTTCTCCACATAAAACTG 19760072 >seq2 Length=244442276 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 118546 TGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCC 118605 ||||||||||||||||||| | | || || | || || |||||||| || ||| Sbjct 228280648 TGAGCAATCATGTATGTCAGGAGAGAATATGATGCGATGTTGAATGGAACACCAAGCCCC 228280589 Query 118606 ATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTG 118664 |||||||| || | || |||| |||||||| |||||||| ||| | ||||| ||||| Sbjct 228280588 ATGTCTGCAGAGCGTTGATACATCTGGCAAGATAGCTCCCCATTTTCCACATAGAACTG 228280530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414475451266588