Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq4 98.7 7e-16 seq8 95.1 8e-15 seq5 93.3 3e-14 seq7 84.2 1e-11 >seq4 Length=246994605 Score = 98.7 bits (108), Expect = 7e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || |||||||| || || || || |||||||| || || || || | Sbjct 242113154 ATGCAGATCTTTGTGAAAACCCTTACTGGCAAGACCATCACTCTTGAGGTGGAGTCTTCA 242113213 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | || | | ||||| || || | ||||| || || Sbjct 242113214 GATACCATTGACAATGTCAAGGCCAAGA-TCCAGGACAAGGAGGGCATCCCGCCGGACCA 242113272 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||||||||| || ||||| || | |||||| | | |||||||| Sbjct 242113273 GCAGCGTCTTATCTTTGCCGGCAAGCAGCTGGAGGATGGACGCACCCTTGCGGATTACAA 242113332 Query 23790 CATACAAAAAGAG 23802 ||| || || ||| Sbjct 242113333 CATTCAGAAGGAG 242113345 >seq8 Length=181122637 Score = 95.1 bits (104), Expect = 8e-15 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| || ||||| ||||| || || ||||| || || || || ||| Sbjct 40272026 AAGATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACCATCACGCTGGAGGTGGAGTCC 40272085 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||||||| | || | | || || || ||||| || || | ||||| || Sbjct 40272086 TCGGACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGAC 40272145 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||||| | || || ||||||||||| || || || | ||||| | | ||| ||| Sbjct 40272146 CAGCAGCGCCTCATCTTCGCCGGCAAACAGCTCGAGGATGGCCGCACCCTCGCCGACTAC 40272205 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || ||||| || Sbjct 40272206 AACATCCAGAAGGAGTCGAC 40272225 >seq5 Length=223902240 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || |||||||| || || || || ||||| | || Sbjct 84631698 ATGCAGATCTTTGTAAAGACCCTGACTGGAAAAACCATAACCCTGGAGGTTGAGAGCTCG 84631639 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| || || | || || || || Sbjct 84631638 GACACCATCGACAATGTGAAGGCGAAGA-TCCAGGACAAGGAGGGCATCCCCCCGGACCA 84631580 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||||||||| ||||| || | ||||| ||| || ||||| Sbjct 84631579 GCAGCGTCTGATCTTCGCCGGCAAACAGCTGGAGGATGGCCGCACCCTAGCAGACTACAA 84631520 Query 23790 CATACAAAAAGAG 23802 ||| ||||| ||| Sbjct 84631519 CATCCAAAAGGAG 84631507 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| ||||| || || || | Sbjct 84632382 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACTATCACCCTCGAGGTGGAGTCTTCA 84632323 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| || || | || || || || Sbjct 84632322 GACACCATCGACAATGTCAAGGCCAAGA-TCCAGGACAAGGAGGGCATCCCACCGGACCA 84632264 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || || || ||||| || ||||| || | ||||| | | |||||||| Sbjct 84632263 GCAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTGCGGATTACAA 84632204 Query 23790 CATACAAAAAGAG 23802 ||| || || ||| Sbjct 84632203 CATCCAGAAGGAG 84632191 >seq7 Length=182381542 Score = 84.2 bits (92), Expect = 1e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||| ||||| | || |||||||||||||| | ||||| || ||||| || ||||| Sbjct 119802223 GACAAGGAAGGGATTCCCCCAGATCAACAGCGACTGATATTCGCTGGCAAGCAGCTGGAG 119802282 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGT 23819 || | |||||| | | || |||||||| ||||| ||||| || | ||||| || Sbjct 119802283 GATGGACGCACGCTGGCTGACTACAACATCCAAAAGGAGTCAACTCTTCATTTGGT 119802338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008500095636