Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq9 122 1e-22 seq6 116 5e-21 seq2 107 3e-18 seq1 104 3e-17 >seq9 Length=159769782 Score = 122 bits (134), Expect = 1e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 ||| |||||||| | ||| | || || | |||| | || | ||||| |||| ||| || Sbjct 15725526 ACCACCCTGATCAACATAGCGAGCAGTATCATTAAAGACACGTAACATAGGAACAATTCC 15725467 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || |||| |||||||||||| ||||||||| ||| | || || |||||| || || Sbjct 15725466 ATTTGATGATCCATTTGTTCCTCGAATATAACTCCCAGTAGCACGGATATTATGAACTGA 15725407 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || |||||||| || || ||||| ||| || ||||| || || ||||| Sbjct 15725406 GACACCAATTCCTCCAGCAGATTTGCTTATTACAGCACACTCTTTCAGGGTTTCATAGAT 15725347 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 ||||| || |||||||| ||||| | |||||||||||| Sbjct 15725346 TCCCTCAATGCTGTCATCTTTCATGCATATAAGAAAACAGCT 15725305 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 ||| |||||||| | ||| | || || | |||| | || | ||||| ||| ||| || Sbjct 145279540 ACCACCCTGATCAACATAGCGAGCAGTATCATTAAAGACACGTAACATAAGAACAATTCC 145279599 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || ||||||||||||||||| ||||||||| || | || | | |||| || || Sbjct 145279600 ATTTGATGTTCCATTTGTTCCTCGAATATAACTCTCAGTAGCACAGACATTATGAACTGA 145279659 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || |||||||| || || ||||| ||| || ||| | || || ||||| Sbjct 145279660 GACACCAATTCCTCCAGCAGATTTGCTTATTACAGCACACTCTTTGAGGGTTTCATAGAT 145279719 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 ||||| || ||||||| ||||| | |||||||||||| Sbjct 145279720 TCCCTCAATGATGTCATCTTTCATGCATATAAGAAAACAGCT 145279761 >seq6 Length=174033170 Score = 116 bits (128), Expect = 5e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 ||| |||||||| | ||| | || || | |||| | |||| ||||| || | ||| || Sbjct 84115635 ACCACCCTGATCAACATAACGAGCAGTATCATTAAAGACTCGTAACATAGGCACAATTCC 84115694 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || ||||||||||||||||| || ||||| ||| | || ||||||||| || || Sbjct 84115695 ATTTGATGTTCCATTTGTTCCTCGTATGTAACTCCCAGTAGCACGAATATTATGAACTGA 84115754 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || |||||||| || || ||||| ||| || |||| || || ||||| Sbjct 84115755 GACACCAATTCCTCCAGCTGATTTGCTTATTACAGCACACTCCTTCAGGGTTTCATAGAT 84115814 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 ||||| || |||||||| ||||| | |||||||||||| Sbjct 84115815 TCCCTCAATGCTGTCATCTTTCATGCATATAAGAAAACAGCT 84115856 >seq2 Length=244442276 Score = 107 bits (118), Expect = 3e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 ||| |||||||| | ||| | || || | |||| | || | ||||| ||| ||| || Sbjct 193849096 ACCACCCTGATCAACATAGCGAGCAGTATCATTAAAGACACGTAACATAAGAACAATTCC 193849037 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || ||||||||||||||||| ||||||||| || | || || |||||| || || Sbjct 193849036 ATTTGATGTTCCATTTGTTCCTCGAATATAACTCTCAGTAGCACGGATATTATGAACTGA 193848977 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || |||||||| || || ||||| ||| || ||| | || || ||||| Sbjct 193848976 GACACCAATTCCTCCAGCAGATTTGCTTATTACAGCACACTCTTTGAGGGTTTCATAGAT 193848917 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 ||||| || ||||||| ||||| | |||||||||||| Sbjct 193848916 TCCCTCAATGATGTCATCTTTCATGCATATAAGAAAACAGCT 193848875 >seq1 Length=307041717 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 ||| |||||||| | ||| | || || | |||| | || | ||||| ||| ||| || Sbjct 17821911 ACCACCCTGATCAACATAGCGAGCAGTATCATTAAAGACACATAACATAAGAACAATTCC 17821852 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || ||||||||||||||||| ||||||||| || | || || |||||| || || Sbjct 17821851 ATTTGATGTTCCATTTGTTCCTCGAATATAACTCTCAGTAGCACGGATATTATGAACTGA 17821792 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || |||||||| || || ||||| ||| || ||| | || || ||||| Sbjct 17821791 GACACCAATTCCTCCAGCAGATTTGCTTATTACAGCACACTCTTTGAGGGTTTCATAGAT 17821732 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 | ||| || ||||||| ||||| | |||||||||||| Sbjct 17821731 TCTCTCAATGTTGTCATCTTTCATGCATATAAGAAAACAGCT 17821690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694666481542880