Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zea_20mays_20[refseq_20GCF_5F000005005.2_202017-02-07] 267 sequences; 2,135,083,061 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq9 125 1e-23 seq6 122 1e-22 seq2 113 6e-20 seq1 107 3e-18 >seq9 Length=159769782 Score = 125 bits (138), Expect = 1e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 ||| |||||||| | ||| | ||||| | |||| | || | ||||| |||| ||| || Sbjct 15725526 ACCACCCTGATCAACATAGCGAGCAGTATCATTAAAGACACGTAACATAGGAACAATTCC 15725467 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || |||| ||||||||||| ||||||||| ||| ||||| |||||| || || Sbjct 15725466 ATTTGATGATCCATTTGTTCCTCGAATATAACTCCCAGTAGCACGGATATTATGAACTGA 15725407 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || |||||||| || ||| |||| |||||| ||||| || |||||||| Sbjct 15725406 GACACCAATTCCTCCAGCAGATTTGCTTATTACAGCACACTCTTTCAGGGTTTCATAGAT 15725347 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 ||||| || || ||||| ||||| | |||||||||||| Sbjct 15725346 TCCCTCAATGCTGTCATCTTTCATGCATATAAGAAAACAGCT 15725305 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 ||| |||||||| | ||| | ||||| | |||| | || | ||||| ||| ||| || Sbjct 145279540 ACCACCCTGATCAACATAGCGAGCAGTATCATTAAAGACACGTAACATAAGAACAATTCC 145279599 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || ||||| ||||||||||| ||||||||| || |||| | |||| || || Sbjct 145279600 ATTTGATGTTCCATTTGTTCCTCGAATATAACTCTCAGTAGCACAGACATTATGAACTGA 145279659 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || |||||||| || ||| |||| |||||| ||| | || |||||||| Sbjct 145279660 GACACCAATTCCTCCAGCAGATTTGCTTATTACAGCACACTCTTTGAGGGTTTCATAGAT 145279719 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 ||||| || | ||||| ||||| | |||||||||||| Sbjct 145279720 TCCCTCAATGATGTCATCTTTCATGCATATAAGAAAACAGCT 145279761 >seq6 Length=174033170 Score = 122 bits (134), Expect = 1e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 ||| |||||||| | ||| | ||||| | |||| | |||| ||||| || | ||| || Sbjct 84115635 ACCACCCTGATCAACATAACGAGCAGTATCATTAAAGACTCGTAACATAGGCACAATTCC 84115694 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || ||||| ||||||||||| || ||||| ||| |||||||||||| || || Sbjct 84115695 ATTTGATGTTCCATTTGTTCCTCGTATGTAACTCCCAGTAGCACGAATATTATGAACTGA 84115754 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || |||||||| || ||| |||| |||||| |||| || |||||||| Sbjct 84115755 GACACCAATTCCTCCAGCTGATTTGCTTATTACAGCACACTCCTTCAGGGTTTCATAGAT 84115814 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 ||||| || || ||||| ||||| | |||||||||||| Sbjct 84115815 TCCCTCAATGCTGTCATCTTTCATGCATATAAGAAAACAGCT 84115856 >seq2 Length=244442276 Score = 113 bits (124), Expect = 6e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 ||| |||||||| | ||| | ||||| | |||| | || | ||||| ||| ||| || Sbjct 193849096 ACCACCCTGATCAACATAGCGAGCAGTATCATTAAAGACACGTAACATAAGAACAATTCC 193849037 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || ||||| ||||||||||| ||||||||| || ||||| |||||| || || Sbjct 193849036 ATTTGATGTTCCATTTGTTCCTCGAATATAACTCTCAGTAGCACGGATATTATGAACTGA 193848977 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || |||||||| || ||| |||| |||||| ||| | || |||||||| Sbjct 193848976 GACACCAATTCCTCCAGCAGATTTGCTTATTACAGCACACTCTTTGAGGGTTTCATAGAT 193848917 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 ||||| || | ||||| ||||| | |||||||||||| Sbjct 193848916 TCCCTCAATGATGTCATCTTTCATGCATATAAGAAAACAGCT 193848875 >seq1 Length=307041717 Score = 107 bits (118), Expect = 3e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 ||| |||||||| | ||| | ||||| | |||| | || | ||||| ||| ||| || Sbjct 17821911 ACCACCCTGATCAACATAGCGAGCAGTATCATTAAAGACACATAACATAAGAACAATTCC 17821852 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || ||||| ||||||||||| ||||||||| || ||||| |||||| || || Sbjct 17821851 ATTTGATGTTCCATTTGTTCCTCGAATATAACTCTCAGTAGCACGGATATTATGAACTGA 17821792 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || |||||||| || ||| |||| |||||| ||| | || |||||||| Sbjct 17821791 GACACCAATTCCTCCAGCAGATTTGCTTATTACAGCACACTCTTTGAGGGTTTCATAGAT 17821732 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 | ||| || | ||||| ||||| | |||||||||||| Sbjct 17821731 TCTCTCAATGTTGTCATCTTTCATGCATATAAGAAAACAGCT 17821690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712932020581440