Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq603 143 6e-29 seq4 127 4e-24 seq2885 107 4e-18 seq3920 104 5e-17 seq1503 104 5e-17 seq2558 102 2e-16 seq3937 100 6e-16 seq1869 100 6e-16 seq1114 100 6e-16 seq4381 98.7 2e-15 seq4021 98.7 2e-15 seq3923 98.7 2e-15 seq3467 98.7 2e-15 seq2735 98.7 2e-15 seq2259 98.7 2e-15 seq1459 98.7 2e-15 seq692 98.7 2e-15 seq3434 96.9 7e-15 seq4271 95.1 3e-14 seq1715 95.1 3e-14 seq1359 89.7 1e-12 >seq603 Length=994148 Score = 143 bits (158), Expect = 6e-29 Identities = 579/892 (65%), Gaps = 25/892 (3%) Strand=Plus/Minus Query 229750 TTCTCTGCGTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCA 229809 ||||| |||||| |||| || || | || ||||| | ||||||||||||||||| Sbjct 842358 TTCTCCATGTTCCCCATCCGGTACCCTCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCG 842299 Query 229810 ACTTTCTGGACCACTGAGGAAGTT--CCTCTGAACGCAGACGTCGTCGACTGGCGTGAGA 229867 | |||||||| || ||||| || ||||| | | |||| | ||||| || | Sbjct 842298 TCGTTCTGGACGACGGAGGAGGTGGACCTCTC--CTCCGACGCGCGCCACTGG---GACA 842244 Query 229868 A-ACTCAATGAC--GACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCT 229924 || | | | ||||| || |||||| || ||| | || | || ||||| | || Sbjct 842243 CCACGCTGTCCCCCGACGAGCGCCATTTCGTCTCCCACGTGCTCGCCTTCTTCGCCGCCT 842184 Query 229925 CCGATGGTATTGTGATGGAAAATCTGCAGACCAACTTTAGTGTG-GAAGTAACGGTTCCA 229983 | |||||||| ||| | || || || | | | || | ||| || || ||| | Sbjct 842183 CTGATGGTATCGTGCTCGAGAACCTCGCGTCGAGGTTCA-TGTCCGACGTGCAGGTCGCC 842125 Query 229984 GAGGCACGGCAATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATAT 230043 ||||| || || || | || ||| | || ||| |||||||| || || Sbjct 842124 GAGGCGCGCGCCTTCTACGGTTTCCAGATCGCCATCGAGAACATCCATTCGGAGATGTAC 842065 Query 230044 GCTCTGCTTATCGACGCGCTTATTTCCGACGAG--CAAGAACGGAACGAGCTTTTTGATG 230101 | ||||| |||| || || |||||| | |||| ||| || ||||| | Sbjct 842064 TCGCTGCTGCTCGAGACGTACATCCGCGACGACGTCGAGAA-GGACCGC-CTTTTCCGCG 842007 Query 230102 CCATTGAAAACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAAC 230161 |||| || | | | || || || | |||||| | ||||| | ||| | || Sbjct 842006 CCATAGACACCGTTCCCGCCGTGCGCCGCAAGGCCGACTGGGCCATGCGCTGGATCGACG 841947 Query 230162 CTGGTAAATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTT 230221 ||| | || |||||||| || ||||||| | || || || || || || ||| Sbjct 841946 GCGGTGAGCGCTTCGCCGAGCGCCTAGTCGCCTTCGCCTGCGTCGAGGGCAT-CTTTTTC 841888 Query 230222 CCGGGAGT-TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGT 230280 ||||| |||||||||||||| ||||| ||| || | ||||| |||||| Sbjct 841887 TCGGGATCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCGGGCCTCACC 841828 Query 230281 CTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATG 230340 | || |||||| ||||| ||||||||||| || || | |||| | || | Sbjct 841827 TTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTC 841768 Query 230341 TATTCAAAGCTCCAGAACAAGCT--ACCATTCGAGACGGTCAAACAAATCATTACAGAAG 230398 || |||| |||||| || | | | ||| |||| | | |||| Sbjct 841767 TACGACCTCCTCCGCGGCAAGCTTGACGAGGCCCGC--GTCCGTGCAATCGTCGCCGAAG 841710 Query 230399 CAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATG 230457 | || || | ||| | | | ||| | || |||||| | || ||||| || | |||||| Sbjct 841709 CCGTCGACATCGAGAGGAACTTCGTCTGCGACGCTCTCCCC-GTCGCGCTCGTCGGCATG 841651 Query 230458 AACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTT 230517 |||| || || ||| | ||||||||||| ||||| || |||||| | | | || || Sbjct 841650 AACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGCTGACCGCCTCCTAATGGCGCTC 841591 Query 230518 GGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTT 230577 || | | |||| |||||||| | |||||||| | | ||||||||||| || || Sbjct 841590 GGCTGCAAGAAGATGTACAACGTCACCAACCCCTTCGACTGGATGGAGCTCATCTCCCTG 841531 Query 230578 CAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAG-AGGCCT 230628 || || |||||||| |||||||| ||||| ||| | ||||| ||| |||||| Sbjct 841530 CAGGGCAAGACCAATTTCTTCGAGAAGCGCGTCGGCGACTACCAGAAGGCCT 841479 >seq4 Length=1057841 Score = 127 bits (140), Expect = 4e-24 Identities = 172/236 (73%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 230395 GAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGG 230453 || || || || | ||||| ||||||| | || ||||| | || ||||| || | || Sbjct 125311 GACGCCGTCGACATCGAAAGGGAGTTCGTCTGCGACGCGCTCCCC-GTCGCTCTCGTCGG 125253 Query 230454 CATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGC 230513 |||||||| | || ||| | ||||| ||||| ||||| ||||||||| | | | || Sbjct 125252 CATGAACGGAGTCCTGATGAGCCAGTATATCGAGTTCGTCGCCGACCGCCTGCTCATGGC 125193 Query 230514 ACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTC 230573 || || | | |||| |||||||| || ||||| | | ||||||||||| || Sbjct 125192 GCTCGGCTGCAAGAAGATGTACAACGTCGCCAATCCCTTCGACTGGATGGAGCTCATCTC 125133 Query 230574 GCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAG-AGGCCT 230628 || || || ||||||||||||||||| ||||| ||| | ||||| ||| |||||| Sbjct 125132 CCTGCAGGGAAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTACCAGAAGGCCT 125077 >seq2885 Length=1410918 Score = 107 bits (118), Expect = 4e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||||||||||||||||||||||||| || || |||| || |||||||||||||||| Sbjct 801111 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 801052 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 801051 GCCCCACGGTGGGC 801038 >seq3920 Length=427629 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 341622 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 341563 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 341562 CCCACGGTGGGC 341551 >seq1503 Length=704043 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 583229 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 583288 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 583289 CCCACGGTGGGC 583300 >seq2558 Length=1427919 Score = 102 bits (112), Expect = 2e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 |||||||||||||||||| |||||||||| || || |||| || |||||||||||||||| Sbjct 195238 TTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 195297 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 195298 GCCCCACGGTGGGC 195311 >seq3937 Length=426735 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 37788 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 37729 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 37728 CCCCACGGTGGGC 37716 >seq1869 Length=654272 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 428073 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 428132 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 428133 CCCCACGGTGGGC 428145 >seq1114 Length=1590138 Score = 100 bits (110), Expect = 6e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 || |||||||||||||||| |||||||||| || || |||| || ||||||||||||||| Sbjct 756199 CTAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 756140 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 756139 AGCCCCACGGTGGGC 756125 >seq4381 Length=210361 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 149062 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 149121 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 149122 CCCACGGTGGGC 149133 >seq4021 Length=370079 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 332810 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 332869 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 332870 CCCACGGTGGGC 332881 >seq3923 Length=433037 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 326175 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 326234 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 326235 CCCACGGTGGGC 326246 >seq3467 Length=464971 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 191757 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 191816 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 191817 CCCACGGTGGGC 191828 >seq2735 Length=537008 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 188600 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 188541 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 188540 CCCACGGTGGGC 188529 >seq2259 Length=618316 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 404906 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 404965 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 404966 CCCACGGTGGGC 404977 >seq1459 Length=692598 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 125386 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 125445 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 125446 CCCACGGTGGGC 125457 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 260043 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 259984 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 259983 CCCACGGTGGGC 259972 >seq692 Length=852161 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 781047 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 781106 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 781107 CCCACGGTGGGC 781118 >seq3434 Length=1356337 Score = 96.9 bits (106), Expect = 7e-15 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 ||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||| Sbjct 218071 CCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCC 218130 Query 165771 CCACGATGGGC 165781 ||||| ||||| Sbjct 218131 CCACGGTGGGC 218141 >seq4271 Length=228678 Score = 95.1 bits (104), Expect = 3e-14 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 165712 CCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCC 165771 |||||||||||||| |||||||||| || || |||| || |||||||||||||||||||| Sbjct 91730 CCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCC 91671 Query 165772 CACGATGGGC 165781 |||| ||||| Sbjct 91670 CACGGTGGGC 91661 >seq1715 Length=12487 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||| ||||||||| Sbjct 4899 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTCGGTTCGAGC 4958 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4959 CCCACGGTGGGC 4970 >seq1359 Length=717861 Score = 89.7 bits (98), Expect = 1e-12 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 || |||||||||||||||| || ||||||| || |||| ||||| |||||||||||||| Sbjct 458173 CTAGCCCGTCTAGCTCAGTTGGCAGAGCGCAAGGCTTTAAATCTTCTGGTCGTGGGTTCG 458114 Query 165767 AGCCCCACG 165775 ||||||||| Sbjct 458113 AGCCCCACG 458105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057762711660860