Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4 91.5 2e-13 seq603 87.8 2e-12 seq2113 86.0 7e-12 >seq4 Length=1057841 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 |||||||| |||||||| || |||||||| | || | |||||||| || || || Sbjct 125373 CATGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTAAGA 125432 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 24253 || ||||| ||||| ||||| ||||||||||| |||| |||| || || || || ||||| Sbjct 125433 CCCGGCATGAGGCCGCGCTTCTTAAGCCAAAAGATGG-CGCAGAAGGAGCCCGAGAAGAA 125491 Query 24254 AATTCCTTCTAC 24265 || || || || Sbjct 125492 GATGCCCTCGAC 125503 >seq603 Length=994148 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || ||||| |||||||| || |||||||| | || | |||||||| || ||||| Sbjct 841775 CAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 841834 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 24253 || ||||| ||||||||||| || ||||| || |||| |||| || ||||| || || || Sbjct 841835 CCCGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGG-CGCAGAAGGATCCCGAGAAAAA 841893 Query 24254 AATTCCTTCTAC 24265 || || || || Sbjct 841894 GATGCCCTCGAC 841905 >seq2113 Length=1451509 Score = 86.0 bits (94), Expect = 7e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 53951 TCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 54010 ||||||||||| ||||| || | ||||| ||| ||||| ||||| | ||||||| Sbjct 1175795 TCAAACTCGTCACCCCAGCAATCAGCTAATCCTGGAGCTTCATTGGGACAAAACAACGAC 1175854 Query 54011 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 54069 |||||| ||| || | |||| || ||| || |||||||||| ||| || || ||| || Sbjct 1175855 CACTCTTCGTTATTTTGGACTCTTTGCATGAATAGATCAGGAACCCAGAGTGC-ATAGAA 1175913 Query 54070 TAGATCTCTGGTTCTATGTTCCTC 54093 ||||| || | | ||| ||||| Sbjct 1175914 AAGATCCCTAGCACGATGCTCCTC 1175937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593688039886560