Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq4346 82.4 9e-11 >seq4346 Length=1110530 Score = 82.4 bits (90), Expect = 9e-11 Identities = 133/190 (70%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 151003 GCGGCCGCCG-TCTTCATGGGCCCCATCTACTACCTGCGGCTGCGGCACCTCACGCAGGA 151061 |||| ||| | | |||||||| || | | ||||| ||| ||| ||| | || |||| Sbjct 586353 GCGGTCGCTGGTGTTCATGGGGCCGACGTTCTACCAGCGACTGATCCACATGGCGGAGGA 586412 Query 151062 CAAGGCCACGGTGCGCTGCCGCGGCAAGAAGACCAAGCTGATCCGGCAGGCCAACGAGGG 151121 ||||| | | | ||| | |||| | | ||||| |||||| | |||| Sbjct 586413 CAAGGTGAAGTTCCGCAACAACGGCCCCGTGCACCCGCTGACACGGCAGCCGGTGGAGGA 586472 Query 151122 CCGCAAGCGAGGCGGCGGCATCAAGTTCGGCGAGATGGAGCGCGACTGCCTCATCGCGCA 151181 | | ||| ||||||| ||||||||||||||||||||||||||||||| ||| || Sbjct 586473 CAAGAGGCGGTACGGCGGCGTCAAGTTCGGCGAGATGGAGCGCGACTGCCTGCTCGGCCA 586532 Query 151182 CGGCGCGGCC 151191 |||||| ||| Sbjct 586533 CGGCGCCGCC 586542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608762387760880