Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1692 105 1e-17 seq348 105 1e-17 >seq1692 Length=674084 Score = 105 bits (116), Expect = 1e-17 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 124627 TTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAAT 124686 |||| || ||||| || || || || ||||| |||||||| ||||||||||| || |||| Sbjct 587274 TTCAGGACAAAGAGGGCATTCCCCCAGATCAGCAAAGGCTGATTTTTGCAGGGAAGCAAT 587215 Query 124687 TAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGG 124746 | || ||| | || ||||||| ||||| || ||||| ||||| ||||| | ||||||| Sbjct 587214 TGGAAGATGGGCGCACATTAGCTGATTACAACATTCAGAAAGAGTCAACACTCCATTTGG 587155 Query 124747 T 124747 | Sbjct 587154 T 587154 >seq348 Length=941607 Score = 105 bits (116), Expect = 1e-17 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 124627 TTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAAT 124686 |||| || ||||| ||||| || || ||||| |||||||| ||||||||||| || |||| Sbjct 469934 TTCAGGACAAAGAGGGTATTCCCCCAGATCAGCAAAGGCTGATTTTTGCAGGGAAGCAAT 469993 Query 124687 TAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGG 124746 | || ||| | | ||||||| ||||| || ||||| ||||| || ||| | ||||||| Sbjct 469994 TGGAAGATGGGCACACATTAGCTGATTACAACATTCAGAAAGAGTCCACTCTCCATTTGG 470053 Query 124747 T 124747 | Sbjct 470054 T 470054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755413297849600