Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq348 84.2 3e-11 >seq348 Length=941607 Score = 84.2 bits (92), Expect = 3e-11 Identities = 105/142 (74%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||||||||| || || | |||||||| | ||| || ||||| || || ||||| Sbjct 470075 GTTCCACCTCTGAGCCTCAGGACCAAATGGAGAGTGGACTCTTTCTGAATGTTGTAATCA 470016 Query 146108 G--AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCG 146165 | || | || | | ||| || ||||| || || |||||||||| ||||||||||| | Sbjct 470015 GCTAATGTGTGC--CCATCTTCCAATTGCTTCCCTGCAAAAATCAGCCTTTGCTGATCTG 469958 Query 146166 GAGGAATTCCTTCTTTATCTTG 146187 | ||||| || ||||| || || Sbjct 469957 GGGGAATACCCTCTTTGTCCTG 469936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743484372170240