Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq4 93.3 9e-14 seq4413 91.5 3e-13 seq603 89.7 1e-12 >seq4 Length=1057841 Score = 93.3 bits (102), Expect = 9e-14 Identities = 136/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||| ||| | || | ||||| || ||||||||||||||||| || || || | ||||| Sbjct 125087 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTTCCCTGCAGGGAGATGAGCTCCAT 125146 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| || |||||| |||||||| ||| | | | || ||| | ||| | Sbjct 125147 CCAGTCGAAGGGATTGGCGACGTTGTACATCTTCTTGCAGCCGAGCGCCATGAGCAGGCG 125206 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCT-CGCTGATACCGATGAGCGCGA 157436 ||| || || |||| ||| |||| |||| | || || | || |||| ||| |||| Sbjct 125207 GTCGGCGACGAACTCGATATACTGGCTCAT-CAGGACTCCGTTCATGCCGACGAGAGCGA 125265 Query 157437 CGGGAAGCGC 157446 |||| ||||| Sbjct 125266 CGGGGAGCGC 125275 >seq4413 Length=1061291 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 248808 AGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAAT 248867 |||||| || ||||| | |||| ||| || || || |||| ||| ||||| | ||| | Sbjct 3617 AGATTTTGACTACGACTATTTTGGTTTTAAGACCCTTGAGAGATCTTATCTGTTGAAAGT 3676 Query 248868 TGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCA 248927 || ||| ||| | |||||| || ||||| ||| | ||| |||| | | |||||||| Sbjct 3677 TGGTGGAAAGGTTGTGGAAAGACCACAGCATATGCTAATGAGAGTTTCCATTGGGATTCA 3736 Query 248928 CAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGAC 248987 ||||||||| || ||| | || || ||| | ||| | | |||||| | || Sbjct 3737 CAAGGATGATATTGAGTCTGCTATCAGAACATACCACATGATGTCTCAGCGCTGGTTTAC 3796 Query 248988 ACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 ||||| |||| || || ||||| || || || Sbjct 3797 TCATGCATCACCAACCCTTTTCAATGCTGGCAC 3829 >seq603 Length=994148 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||| ||| | || | ||||| || || |||||||| ||||| || || || | ||||| Sbjct 841489 GTAGTCGCCGACGCGCTTCTCGAAGAAATTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 841548 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| ||||||| | |||||||| ||| | | | || ||| | || | Sbjct 841549 CCAGTCGAAGGGGTTGGTGACGTTGTACATCTTCTTGCAGCCGAGCGCCATTAGGAGGCG 841608 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| || || |||| |||||||| ||||| | || | || |||| ||||||||| Sbjct 841609 GTCAGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGAC 841668 Query 157438 GGGAAGCGC 157446 ||| || || Sbjct 841669 GGGGAGAGC 841677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073704187988096