Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq4493 95.1 9e-15 seq359 84.2 2e-11 seq1692 82.4 6e-11 >seq4493 Length=164055 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| || | || || | |||||| || || || || || ||||||||||| || Sbjct 95746 CCTCCCCTGAGACGGAGCACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCA 95687 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | | || |||| || ||||| ||| ||||||| | || ||||| ||| Sbjct 95686 AGGGTCCTGCCGTCCTCCAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCTGGGGGA 95627 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| ||||| || || | |||||| | | | |||||| || ||| Sbjct 95626 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAGGACTCCACC 95567 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| |||||| | |||||||||||||| || |||||||| ||||| Sbjct 95566 TCAAGGGTGATAGTCTTGCCGGTCAATGTCTTCACAAAAATCTGCAT 95520 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | |||||| ||||| || || || ||||||||||| || | || | | ||| Sbjct 96187 AGGACAAGGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTCCTGCCATCC 96128 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| ||||||| | || || || ||| | ||| ||||| || Sbjct 96127 TCCAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCT 96068 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | ||| |||||| || ||| |||| |||||| | Sbjct 96067 TGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGGACTCCACCTCAAGGGTGATAGTC 96008 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| |||||||| || ||||| || ||||| Sbjct 96007 TTGCCAGTCAATGTCTTCACAAAGATCTGCAT 95976 >seq359 Length=971778 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| || || || |||| |||||| |||||||| || |||||||||||||| ||| Sbjct 509648 CCACCCCTGAGCCTGAGGACCAAGTGAAGAGTTGATTCCTTCTGAATGTTGTAGTCAGCC 509589 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | ||| ||||| || ||||| ||| | || | | ||||||||| || Sbjct 509588 AGTGTGCGTCCATCCTCCAACTGCTTGCCAGCAAATATCAAACGCTGTTGATCCGGAGGA 509529 Query 18219 ACGCCTTCCTTATC 18232 | |||||||| || Sbjct 509528 ATCCCTTCCTTGTC 509515 >seq1692 Length=674084 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| |||| || || || |||| || |||||||| ||||| ||||||||||| || || Sbjct 587135 TCCACCCCTGAGCCTCAGGACCAAATGGAGTGTTGACTCTTTCTGAATGTTGTAATCAGC 587194 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | |||||||||||| || || ||| | || || ||||| ||||| ||| Sbjct 587195 TAATGTGCGCCCATCTTCCAATTGCTTCCCTGCAAAAATCAGCCTTTGCTGATCTGGGGG 587254 Query 18218 CACGCCTTCCTTATC 18232 | ||| || || || Sbjct 587255 AATGCCCTCTTTGTC 587269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379323093640890