Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq4493 102 8e-17 seq2624 95.1 1e-14 seq4197 93.3 4e-14 seq1848 89.7 5e-13 seq1148 84.2 2e-11 >seq4493 Length=164055 Score = 102 bits (112), Expect = 8e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| || ||||| || || ||||| || || | || || ||| || ||||| Sbjct 95723 GTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCGTCCTCCAGCTG 95664 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || |||||| |||| ||||| |||||||| || || ||||| || ||||| ||| || Sbjct 95663 CTTGCCAGCAAAGATAAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTT 95604 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || | | || | ||||| | || ||||||||||| ||| | ||||||||||| Sbjct 95603 AGCCTTGACGTTGTCGATGGTGTCAGAGGACTCCACCTCAAGGGTGATAGTCTTGCCGGT 95544 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 ||| || || || || || ||||| Sbjct 95543 CAATGTCTTCACAAAAATCTGCAT 95520 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| || ||||| || || ||||| || || | || || || || ||||| Sbjct 96179 GTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTCCTGCCATCCTCCAGCTG 96120 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || || ||| |||| ||||| ||||| || || || ||||| || ||||| ||| || Sbjct 96119 CTTGCCGGCAAAGATAAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATCTT 96060 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || | | || | ||||| | || ||||||||||| ||| | |||||||| || Sbjct 96059 GGCCTTGACATTGTCAATGGTGTCAGAGGACTCCACCTCAAGGGTGATAGTCTTGCCAGT 96000 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 ||| || || || || || ||||| Sbjct 95999 CAATGTCTTCACAAAGATCTGCAT 95976 >seq2624 Length=565299 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| || |||||||| ||||| || |||| || || ||||| || ||| Sbjct 25569 GTAGACTCCTTCTGAATGTTGTAATCAGCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCA 25628 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| ||||| ||||| || ||||| || || || ||||| ||| || || Sbjct 25629 GCAAAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTAGCCTTC 25688 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | || || ||||||| || | |||||||||||||| || Sbjct 25689 ACGTTGTCGATCGTGTCTGAGGATTCGACCTCAAGCGTAATTGTCTTGCCGGTCAAGGTC 25748 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 25749 TTGACAAAGATCTGCAT 25765 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || || || |||| ||| || ||||| || ||| Sbjct 25341 GTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCCTCAAGCTGCTTGCCA 25400 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || | || ||||| ||||| || || || ||||| || ||||| ||| || || Sbjct 25401 GCGAAAATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 25460 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | || ||| ||||||| ||| | ||||||||||||| || Sbjct 25461 ACATTGTCGATCGTGTCTGAGGACTCAACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTC 25520 Query 139748 TTTACGAATATTTGCATAGCT 139768 || || || || |||||| || Sbjct 25521 TTGACAAAGATCTGCATACCT 25541 >seq4197 Length=262831 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| | ||||| || ||||| || || ||||| || || | |||| || || Sbjct 76576 AACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCCTC 76517 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||| || |||||| |||||||||| ||||| || || || ||||| || ||||| Sbjct 76516 AAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 76457 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| || || | | || | |||||| | | ||| ||||||| ||| | ||||| Sbjct 76456 GATCTTGGCCTTCACATTGTCAATTGTGTCTGATGACTCAACCTCAAGGGTGATGGTCTT 76397 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 |||||||| || || || || || |||||| || Sbjct 76396 GCCGGTCAGAGTCTTGACAAAGATCTGCATACCT 76363 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||| | || ||||| || || || || ||||| Sbjct 76822 GCCACCACGGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAATCCGC 76763 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || || ||||| ||||||||| |||||||||| ||||| || || || Sbjct 76762 AAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGGGG 76703 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| || || | | || | |||||| | | ||| || Sbjct 76702 GATGCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTGTCAATTGTGTCAGACGACTCAAC 76643 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | || ||||||||||| || || || || || ||||| Sbjct 76642 CTCCAGGGTGATTGTTTTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 76595 >seq1848 Length=11040 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| || || ||||| || ||| | |||| ||| || ||||| || || Sbjct 5830 GTAGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCG 5771 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| |||||||| || || || || || || ||||| ||| || || Sbjct 5770 GCAAAGATCAAGCGTTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTG 5711 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| | ||||||||||| || | ||||||||||||| || Sbjct 5710 ACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGAGTGATAGTCTTGCCGGTCAGAGTC 5651 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 5650 TTGACGAAGATCTGCAT 5634 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| | || || || || ||||| || || Sbjct 6058 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCTGCCATCCTCCAGCTGCTTGCCG 5999 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| ||||||||| || ||||| ||||| || ||||| ||| || || Sbjct 5998 GCAAAGATCAAACGTTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 5939 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| | ||| ||||||| || | ||||||||||||| || Sbjct 5938 ACGTTGTCAATGGTGTCGGAAGACTCTACCTCAAGAGTGATGGTCTTGCCGGTCAGAGTC 5879 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 5878 TTCACGAAGATCTGCAT 5862 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| | |||| || || |||||||| ||| Sbjct 5602 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCCAGCTGTTTGCCA 5543 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| ||||| ||||| || || || || || || || || ||| || ||| Sbjct 5542 GCGAAGATGAGACGCTGCTGGTCAGGGGGAATACCCTCCTTATCCTGGATCTTAGCTTTG 5483 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | || ||||||||| | ||| | |||||||||||||| || Sbjct 5482 ACGTTGTCGATGGTGTCAGAGGACTCCACCTCGAGGGTGATAGTCTTGCCGGTCAATGTC 5423 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 5422 TTCACAAAAATCTGCAT 5406 >seq1148 Length=724074 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||| || |||| || || || |||| || || ||||| || || || || || || || Sbjct 119785 GTCCTCCAGCTACTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTT 119844 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| || || | | ||||| ||||| | ||||||||||| | | |||| Sbjct 119845 GTCCTGGATCTTCGACTTCACGTTCTCCACCGTGTCCGACGGCTCCACCTCCAGGATCAC 119904 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||| |||| ||| || ||||| || ||||| Sbjct 119905 CGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 119940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496035959982400