Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq4 113 6e-20 seq603 104 3e-17 seq4413 91.5 2e-13 seq2113 89.7 7e-13 >seq4 Length=1057841 Score = 113 bits (124), Expect = 6e-20 Identities = 120/156 (77%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 |||||||| ||||||||||| |||||||| | || || |||||||| || || || Sbjct 125373 CATGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTAAGA 125432 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||| ||||| ||||| ||||||||||| |||| |||| || || || || ||||| Sbjct 125433 CCCGGCATGAGGCCGCGCTTCTTAAGCCAAAAGATGG-CGCAGAAGGAGCCCGAGAAGAA 125491 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTC 50114 ||| || || || ||| || ||||| || | ||| Sbjct 125492 GATGCCCTCGACGCAGGCGAAAGCAACGAGGCGCTC 125527 >seq603 Length=994148 Score = 104 bits (114), Expect = 3e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| ||||||||||| |||||||| | || || |||||||| || ||||| Sbjct 841775 CAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 841834 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||| ||||||||||| || ||||| || |||| |||| || || || || || || Sbjct 841835 CCCGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGG-CGCAGAAGGATCCCGAGAAAAA 841893 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTC 50114 ||| || || || ||| ||||| || || | ||| Sbjct 841894 GATGCCCTCGACGCAGGCGAAGGCGACTAGGCGCTC 841929 >seq4413 Length=1061291 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 ||| || ||||| || | ||| || || || || |||||||| | ||||| | | Sbjct 3830 AGTGCCAGCATTGAAAAGGGTTGGTGATGCATGAGTAAACCAGCGCTGAGACATCATGTG 3771 Query 80394 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTA 80452 ||| || ||||| || || ||||| | ||| ||||| || | | || | ||||| Sbjct 3770 GTATGTTCTGATAGCAGACTCAATATCATCCTTG-TGAATCCCAATGGAAACTCTCATTA 3712 Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCA 80512 ||| ||||| |||||||| || | ||| | | |||||||| |||||| | || | Sbjct 3711 GCATATGCTGTGGTCTTTCCACAACCTTTCCACCAACTTTCAACAGATAAGATCTCTCAA 3652 Query 80513 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 || |||||||||||||||| ||| ||| |||| || ||||| || Sbjct 3651 GGGTCTTAAAACCAAAATAGTCGTAGTCAAAATCTCTATCATAAATTAT 3603 >seq2113 Length=1451509 Score = 89.7 bits (98), Expect = 7e-13 Identities = 127/174 (73%), Gaps = 6/174 (3%) Strand=Plus/Plus Query 79833 TTCTCTTTCGTATTG--TGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAAT 79890 |||||| || |||| |||| | | || || |||||||| ||||| ||| ||||| Sbjct 1175767 TTCTCTCTCATATTTCTTGTACAGATTC--TCAAACTCGTCACCCCAGCAATCAGCTAAT 1175824 Query 79891 CCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATA 79950 || ||| ||| | ||||| | ||||||||||||| | | || | |||| || ||| Sbjct 1175825 CCTGGAGCTTCATTGGGACAAAACAACGACCACTCTTCGTTATTTTGGACTCTTTGCATG 1175884 Query 79951 AAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTC 80003 || |||||||||| ||| || || ||| || ||||| || | | ||||||||| Sbjct 1175885 AATAGATCAGGAACCCAGAGTGC-ATAGAAAAGATCCCTAGCACGATGCTCCTC 1175937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718228199856080