Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4 91.5 2e-13 seq603 87.8 2e-12 seq4413 86.0 8e-12 >seq4 Length=1057841 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 |||||||| ||||||||||| ||||| || | || | |||||||| || || || Sbjct 125373 CATGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTAAGA 125432 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAA 42183 || ||||| ||||| ||||| ||||||||||| || | |||| || || || || ||||| Sbjct 125433 CCCGGCATGAGGCCGCGCTTCTTAAGCCAAAAGAT-GGCGCAGAAGGAGCCCGAGAAGAA 125491 Query 42184 GATTCCTTCTAC 42195 ||| || || || Sbjct 125492 GATGCCCTCGAC 125503 >seq603 Length=994148 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| ||||||||||| ||||| || | || | |||||||| || ||||| Sbjct 841775 CAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 841834 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAA 42183 || ||||| ||||||||||| || ||||| || || | |||| || ||||| || || || Sbjct 841835 CCCGGCATGAGGCCACGCTTCTTGAGCCAGAAGAT-GGCGCAGAAGGATCCCGAGAAAAA 841893 Query 42184 GATTCCTTCTAC 42195 ||| || || || Sbjct 841894 GATGCCCTCGAC 841905 >seq4413 Length=1061291 Score = 86.0 bits (94), Expect = 8e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 ||| || ||||| || | ||| || || || || |||||||| | ||||| | | Sbjct 3830 AGTGCCAGCATTGAAAAGGGTTGGTGATGCATGAGTAAACCAGCGCTGAGACATCATGTG 3771 Query 72477 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTA 72535 ||| || ||||| || || ||||| | ||| || || || | | || | ||||| Sbjct 3770 GTATGTTCTGATAGCAGACTCAATATCATCCTTG-TGAATCCCAATGGAAACTCTCATTA 3712 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 ||||||||| |||||||| || | ||| | | |||||||| || ||| | || | Sbjct 3711 GCATATGCTGTGGTCTTTCCACAACCTTTCCACCAACTTTCAACAGATAAGATCTCTCAA 3652 Query 72596 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 || |||||||||||||||| ||| ||| |||| || ||||| || Sbjct 3651 GGGTCTTAAAACCAAAATAGTCGTAGTCAAAATCTCTATCATAAATTAT 3603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671101263856720