Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq4 176 7e-39 seq603 150 3e-31 >seq4 Length=1057841 Score = 176 bits (194), Expect = 7e-39 Identities = 400/589 (68%), Gaps = 21/589 (4%) Strand=Plus/Minus Query 124993 CCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCT 125052 || |||| |||||| |||| | | || ||||| | ||||| ||| | ||| || | Sbjct 125952 CCATGTTCCCCATCCGGTACCCGCAGATCTGGGAGTTCTACAAGAAGTCGGTGGCGTCGT 125893 Query 125053 TTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTT-TG 125111 | ||||||| || ||||| || || ||| ||| | | | ||||| || ||| || Sbjct 125892 TCTGGACGGCGGAGGAGGTGGACCTCTCCTCCGACGCGCGCCACTGGGACAC-CGTGCTG 125834 Query 125112 ACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGA 125171 | ||||| | || || || ||| | | |||||||| |||| ||| ||||| Sbjct 125833 TCCCCCGACGAGCGGCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCTGATGGC 125774 Query 125172 ATCGTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTC 125230 ||||| ||| || || | | | ||| | || || || | | |||| | | Sbjct 125773 ATCGTGCTCGAGAACCTCGCGTCCAGGTTCATGTCC-GACGTGCAGGTCGCCGAGGCG-C 125716 Query 125231 GTGCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACAC 125289 | || || ||||| ||||| ||| || ||||| | |||||||| |||||||| | Sbjct 125715 GCGCCTTCTACGGGTTCCAGATCGCCATCGAGAATATCCACTCGGAGATGTACTCGCTGC 125656 Query 125290 TGATTGACATGTACATTCGCGATCCGCAACGT----AAACACATGCTCTTTAACGCAATC 125345 || | || | |||||| ||||| | |||| || || ||||| ||| ||| Sbjct 125655 TGCTCGAGACGTACATCCGCGA----CGACGTCGAGAAGGACCGTCTCTTCCGCGCCATC 125600 Query 125346 GACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGAC 125405 ||||| || || || | || ||||| | |||| || || |||||||| | || | Sbjct 125599 GACACCGTCCCTGCTGTGCGCCGCAAGGCCGAGTGGGCCATGCGCTGGATCGACGGCGGC 125540 Query 125406 AAGT-CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTC 125464 || ||||| |||| | || || || |||||| ||| |||||||||||||| || Sbjct 125539 GAGCGCTTCG----CCGAGCGCCTCGTTGCTTTCGCCTGCGTCGAGGGCATCTTCTTCTC 125484 Query 125465 GGG-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGC 125523 ||| | || |||| ||||||||||||| ||||||||||| |||||||| || || || Sbjct 125483 GGGCTCCTTCTGCG-CCATCTTTTGGCTTAAGAAGCGCGGCCTCATGCCGGGTCTTACCT 125425 Query 125524 ACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 | |||||| | || || || ||||||||||| ||||| ||||| || Sbjct 125424 TCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGC 125376 >seq603 Length=994148 Score = 150 bits (166), Expect = 3e-31 Identities = 395/590 (67%), Gaps = 21/590 (4%) Strand=Plus/Minus Query 124993 CCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCT 125052 || |||| |||||| |||| | | | || ||||| | ||||| ||||| ||| || | Sbjct 842354 CCATGTTCCCCATCCGGTACCCTCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGT 842295 Query 125053 TTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACT-CGTTTG 125111 | |||||| || ||||| || || ||| ||| | | | ||||| || || | Sbjct 842294 TCTGGACGACGGAGGAGGTGGACCTCTCCTCCGACGCGCGCCACTGGGACACCACGCTGT 842235 Query 125112 ACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGA 125171 | || ||||| | || | || ||| | | |||||||| |||| ||| ||||| Sbjct 842234 CCCCCGAC-GAGCGCCATTTCGTCTCCCACGTGCTCGCCTTCTTCGCCGCCTCTGATGGT 842176 Query 125172 ATCGTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTC 125230 ||||| ||| || || | | | ||| | || || || | | |||| | | Sbjct 842175 ATCGTGCTCGAGAACCTCGCGTCGAGGTTCATGTCC-GACGTGCAGGTCGCCGAGGCG-C 842118 Query 125231 GTGCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACAC 125289 | || || ||||| ||||| ||| || |||||| | || ||||| |||||||| | Sbjct 842117 GCGCCTTCTACGGTTTCCAGATCGCCATCGAGAACATCCATTCGGAGATGTACTCGCTGC 842058 Query 125290 TGATTGACATGTACATTCGCGATCCGCAACGT----AAACACATGCTCTTTAACGCAATC 125345 || | || | |||||| ||||| | |||| || || || || ||| || Sbjct 842057 TGCTCGAGACGTACATCCGCGA----CGACGTCGAGAAGGACCGCCTTTTCCGCGCCATA 842002 Query 125346 GACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGAC 125405 ||||| || || | | || ||||| | |||| || || |||||||| | || Sbjct 842001 GACACCGTTCCCGCCGTGCGCCGCAAGGCCGACTGGGCCATGCGCTGGATCGACGGCGGT 841942 Query 125406 AAGT-CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTC 125464 || ||||| |||| | || || || |||||| ||| ||||||||||| || || Sbjct 841941 GAGCGCTTCG----CCGAGCGCCTAGTCGCCTTCGCCTGCGTCGAGGGCATCTTTTTCTC 841886 Query 125465 GGG-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGC 125523 ||| | || |||| ||||||| |||||||||||||| || |||||||| || || || Sbjct 841885 GGGATCCTTCTGCG-CCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCGGGCCTCACCT 841827 Query 125524 ACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 | |||||| | || || || ||||||||||| ||||| ||||| ||| Sbjct 841826 TCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCC 841777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741017311628720