Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq2624 84.2 2e-11 seq4493 82.4 6e-11 >seq2624 Length=565299 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| | ||| | ||| | ||| | || |||||||| || || ||||| |||||| Sbjct 25995 CCTCCTCTGAGCCTGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCC 26054 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | ||||||||||| || || ||| |||| || | |||||| || ||| Sbjct 26055 AGGGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAAATCAGACGCTGCTGGTCTGGGGGA 26114 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGG-CTCCGT 18993 | |||||| ||||| || || || || | | ||| || || | ||| ||| Sbjct 26115 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTC-CGAGGACTCAAC 26173 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||| ||| ||||| || || || | || || ||||| || ||||| Sbjct 26174 CTCGAGGGTGATGGTCTTGCCGGTGAGTGTCTTCACAAAGATCTGCAT 26221 >seq4493 Length=164055 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | ||| | || |||||||| || || ||||| || || | || || ||||||| Sbjct 95729 CACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCGTCCTC 95670 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || ||| | ||||| | ||||||||| ||| | |||||| ||||| Sbjct 95669 CAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 95610 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || || || | | ||| || || | |||| || | ||| || || || Sbjct 95609 GATCTTAGCCTTGACGTTGTCGATGGTGTCAGAGGACTCCACCTCAAGGGTGATAGTCTT 95550 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || || || |||||||| ||||| Sbjct 95549 GCCGGTCAATGTCTTCACAAAAATCTGCAT 95520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414549952115668