Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq1692 84.2 2e-11 seq348 84.2 2e-11 >seq1692 Length=674084 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/146 (73%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029 || ||||| |||| || | | ||||| |||||||| ||||| || ||||| || ||| Sbjct 587124 TTGATCATAGTTCCACCCCTGAGCCTCAGGACCAAATGGAGTGTTGACTCTTTCTGAATG 587183 Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089 |||||||| | | || |||||||||||| || || ||| |||| ||||| || Sbjct 587184 TTGTAATCAGCTAATGTGCGCCCATCTTCCAATTGCTTCCCTGCAAAAATCAGCCTTTGC 587243 Query 20090 TGATCGACGGGCACGCCTTCTTTGTC 20115 ||||| ||| | ||| |||||||| Sbjct 587244 TGATCTGGGGGAATGCCCTCTTTGTC 587269 >seq348 Length=941607 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/146 (73%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029 || ||||| |||| |||| | ||||| |||||||| || || || ||||| || ||| Sbjct 470084 TTGATCATAGTTCCACCTCTGAGCCTCAGGACCAAATGGAGAGTGGACTCTTTCTGAATG 470025 Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089 |||||||| | | || | |||||||||||| || || ||| |||| ||||| || Sbjct 470024 TTGTAATCAGCTAATGTGTGCCCATCTTCCAATTGCTTCCCTGCAAAAATCAGCCTTTGC 469965 Query 20090 TGATCGACGGGCACGCCTTCTTTGTC 20115 ||||| ||| | || |||||||| Sbjct 469964 TGATCTGGGGGAATACCCTCTTTGTC 469939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419564075762682