Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq4197 122 2e-22 seq2778 116 9e-21 seq1692 96.9 8e-15 seq348 93.3 1e-13 seq2624 89.7 1e-12 seq4 84.2 5e-11 >seq4197 Length=262831 Score = 122 bits (134), Expect = 2e-22 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || ||||||||||| || || | || || || ||||| || || ||||| Sbjct 76368 ATACCTCCCCTGAGCCTAAGTACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 76309 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | || || || || || || ||||| || || || | |||||| || || Sbjct 76308 GCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGTTGGTCTGGG 76249 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG-TTC 104508 || || || || || ||||| ||||| || || ||||| || | || || | ||| || Sbjct 76248 GGGATACCCTCCTTGTCCTGGATCTTAGCCTTCACATTGTCGATCGTGTC-CGAGGACTC 76190 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| ||||| || ||||| ||||| || || || ||||| |||||||| Sbjct 76189 GACCTCAAGTGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 76139 >seq2778 Length=1391004 Score = 116 bits (128), Expect = 9e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| ||||||||||| || ||||| | || || | || || || || || || || Sbjct 173804 GTAGACTCTTTCTGAATGTTGTAGTCGGCAAGGGTACGGCCATCCTCCAGCTGCTTGCCG 173863 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || || || || || ||||| || ||||||||||| || || Sbjct 173864 GCAAAGATCAGGCGCTGCTGGTCTGGGGGGATACCTTCCTTGTCCTGAATCTTGGCCTTC 173923 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | ||| ||| || | || ||||| || |||| ||||| || || || || Sbjct 173924 ACATTGTCGATGGTGTCG-GAGCTCTCAACCTCCAGAATAATGGTCTTGCCTGTGAGAGT 173982 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 173983 CTTGACAAAGATCTGCAT 174000 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || || || | || || || || | || || || ||||| || || ||||| Sbjct 174227 ATTCCACCCCTGAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCG 174286 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || || || || || || || ||||||||||| || || | ||| || || || Sbjct 174287 GCAAGGGTCCTGCCATCCTCCAGCTGCTTTCCAGCAAAGATGAGGCGCTGCTGGTCTGGG 174346 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||||||||| || || || || || | || || | || Sbjct 174347 GGAATGCCCTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCAATCGTGTCTGATGACTCA 174406 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| ||||| || ||||| ||||| || || || || || |||||||| Sbjct 174407 ACCTCAAGTGTGATGGTCTTGCCAGTGAGAGTCTTAACGAAGATCTGCAT 174456 >seq1692 Length=674084 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| || || ||||| || || | ||| | ||| || ||||||||||| || || |||| Sbjct 587134 TTCCACCCCTGAGCCTCAGGACCAAATGGAGTGTTGACTCTTTCTGAATGTTGTAATCAG 587193 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 || || | || ||||| | ||| || || |||||||| ||||| || ||||| || | Sbjct 587194 CTAATGTGCGCCCATCTTCCAATTGCTTCCCTGCAAAAATCAGCCTTTGCTGATCTGGGG 587253 Query 104451 GTATTCCTTCTTTATCCTGAA 104471 | || || ||||| ||||||| Sbjct 587254 GAATGCCCTCTTTGTCCTGAA 587274 >seq348 Length=941607 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| ||||| ||||| || || | ||| | || || ||||||||||| || || |||| Sbjct 470074 TTCCACCTCTGAGCCTCAGGACCAAATGGAGAGTGGACTCTTTCTGAATGTTGTAATCAG 470015 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 || || || ||||| | ||| || || |||||||| ||||| || ||||| || | Sbjct 470014 CTAATGTGTGCCCATCTTCCAATTGCTTCCCTGCAAAAATCAGCCTTTGCTGATCTGGGG 469955 Query 104451 GTATTCCTTCTTTATCCTGAA 104471 | || || ||||| ||||||| Sbjct 469954 GAATACCCTCTTTGTCCTGAA 469934 >seq2624 Length=565299 Score = 89.7 bits (98), Expect = 1e-12 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || | || || || || || || ||| Sbjct 25113 GTTGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCA 25172 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||| || || || || || || || || ||||| ||||| || || Sbjct 25173 GCAAAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTC 25232 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || | || ||||| || || || ||||| ||||| | ||| Sbjct 25233 ACGTTGTCAATCGTGTCAGATGACTCGACCTCAAGAGTGATGGTCTTGCCAGTCAATGTC 25292 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 25293 TTGACGAAGATCTGCAT 25309 >seq4 Length=1057841 Score = 84.2 bits (92), Expect = 5e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 |||||||| ||| || || || || ||||| ||||| || || ||| ||||||||| Sbjct 125518 GTTGCTTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTTTGG 125459 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 | ||||| | ||||| ||||| || | || ||||| ||||| | || | | ||| Sbjct 125458 CTTAAGAAGCGCGGCCTCATGCCGGGTCTTACCTTCTCCAACGAGCTCATCTCCCGCGAC 125399 Query 269258 GAAGGTTTACACTGCGACTTCGCTTG 269283 || || | |||||||||||||| || Sbjct 125398 GAGGGCCTGCACTGCGACTTCGCATG 125373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151331690135576