Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq4151 95.1 1e-14 >seq4151 Length=309779 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/235 (69%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| ||||| ||||| || || ||||||| | || |||| ||| | ||||| Sbjct 69960 ACGCCAGTGGAACCGAACCCACCCTCGCCTCTGACGGTGGCGTCAAGGTCGTCGACCTCG 70019 Query 5561 TCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTT 5620 | || || || | | |||| ||||| |||||| || ||||| || | ||| Sbjct 70020 GCGACCTCCGGCGTCACGATCAACTCGATGATCATCTGCGCGATCCGGTCACCGGGCTTC 70079 Query 5621 ACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAGT 5678 || |||| || || |||| |||||| || | || ||||| ||| ||||||| Sbjct 70080 ACAACGAAGTCCACGT--CCGAGTGGTTGAAGAGGATGACCCCCACCGGGCCACGGTAGT 70137 Query 5679 CGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGA 5733 | ||||| ||||| || |||||||||||||| ||||||| | ||||| || || Sbjct 70138 CCGCGTCGATCACTCCGGCGCCCACGTCGATCGAGTGCTTCAGAGCCAGCCCCGA 70192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430030698895664