Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2778 105 6e-18 seq1848 100 2e-16 seq4493 95.1 1e-14 seq2624 95.1 1e-14 seq4294 82.4 6e-11 seq192 82.4 6e-11 >seq2778 Length=1391004 Score = 105 bits (116), Expect = 6e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 || || ||| |||||| || |||||||| ||||| || ||| || |||| || ||||| Sbjct 175305 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC-AAGTGTGCGTCCGTCTTCAAGCTG 175363 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || | ||||||||||||| || | | ||||||||| || || Sbjct 175364 CTTGCCAGCGAAGATGAGACGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTT 175423 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | |||||||| | ||||| ||||| |||||||| || || || Sbjct 175424 GGCCTTGACGTTGTCAATGGTATCCGAGGACTCAACCTCGAGGGTTATGGTCTTGCCAGT 175483 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 ||| || |||||||| ||||||||| Sbjct 175484 GAGGGTCTTCACAAAGATCTGCATC 175508 >seq1848 Length=11040 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| ||||| || |||||||| || |||| || | |||||||||||| Sbjct 6292 TGAAGAGTGGATTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGGCCATCCTCCAGCTGC 6233 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||||||||| ||| || | | ||||||||| || || Sbjct 6232 TTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTG 6173 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | ||||| |||| ||||||| ||| | || || || || || || Sbjct 6172 GCCTTGACATTATCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTGCCAGTC 6113 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 | ||| ||||||||||||||||| Sbjct 6112 AAAGTCTTCACAAAAATCTGCAT 6090 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || || | || |||||||||||||||| ||| | | Sbjct 5825 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAA 5766 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || || || ||||| ||| || | || ||||||||| || || ||||| Sbjct 5765 GATCAAGCGTTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 5706 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| |||| ||||||| ||| | || || || || ||||| ||||| || || Sbjct 5705 GTCAATGGTGTCGGAAGACTCCACCTCAAGAGTGATAGTCTTGCCGGTCAGAGTCTTGAC 5646 Query 48715 AAAAATCTGCAT 48726 || |||||||| Sbjct 5645 GAAGATCTGCAT 5634 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCCTCCAGCTGCTTACCGCCG 48592 |||||| || |||||||| || || | ||| || | |||||||||||||| ||| | Sbjct 6053 CTCCTTCTGGATGTTGTAGTCGGCGAGG-GTC-CTGCCATCCTCCAGCTGCTTGCCGGCA 5996 Query 48593 TAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATA 48652 | || ||||| ||||| ||| || | | ||||||||| || || ||||| Sbjct 5995 AAGATCAAACGTTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACG 5936 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | ||||| |||| |||||| ||| | || ||||| || ||||| ||||| ||| Sbjct 5935 TTGTCAATGGTGTCGGAAGACTCTACCTCAAGAGTGATGGTCTTGCCGGTCAGAGTCTTC 5876 Query 48713 ACAAAAATCTGCAT 48726 || || |||||||| Sbjct 5875 ACGAAGATCTGCAT 5862 >seq4493 Length=164055 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/208 (72%), Gaps = 8/208 (4%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCCTCCAGCT 48581 ||||| ||| |||||| || |||||||| ||||| || ||| || |||||||||||| Sbjct 95722 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC-AAGGGTC-CTGCCGTCCTCCAGCT 95665 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||| || | | || | |||||||||||| || | | ||||||||| || | Sbjct 95664 GCTTGCCAGCAAAGATAAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCT 95605 Query 48642 TCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACC 48699 | ||||| | | || ||||| || | |||||| ||| | || || || || || Sbjct 95604 TAGCCTTGACGTTGTCG--ATGGTGTCAGAGGACTCCACCTCAAGGGTGATAGTCTTGCC 95547 Query 48700 GGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| | || |||||||||||||||||| Sbjct 95546 GGTCAATGTCTTCACAAAAATCTGCATC 95519 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCT 48581 |||||| || |||||| || |||||||| ||||| || || || | || ||||||| Sbjct 95951 ATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGC-AAGGGTGCGGCCATCTTCCAGCT 95893 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||| ||| | | || | ||||||||| ||| || | || ||||||||| || | Sbjct 95892 GCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCT 95833 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 | ||||| | ||||| || | ||||||| ||||| || || || || || | Sbjct 95832 TAGCCTTGACGTTGTCAATGGTGTCAGAAGACTCCACCTCGAGGGTGATAGTCTTGCCAG 95773 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | ||||| || || || |||||||| Sbjct 95772 TCAGAGTCTTGACGAAGATCTGCAT 95748 >seq2624 Length=565299 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | | ||| | ||| | || || ||| |||||| || |||||||| || ||| Sbjct 25995 CCTCCTCTGAGCCTGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCC 26054 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || | |||||||||||||| || | |||| | ||||||||| || || Sbjct 26055 AGGGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAAATCAGACGCTGCTGGTCTGGGGGA 26114 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCG 48677 | | ||||||||| || || ||||| | | || ||||| || | ||||| Sbjct 26115 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCG--ATGGTGTCCGAGGACTCAA 26172 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||| || ||||| || |||||||| || |||||||| ||||||||| Sbjct 26173 CCTCGAGGGTGATGGTCTTGCCGGTGAGTGTCTTCACAAAGATCTGCATC 26222 >seq4294 Length=230714 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/198 (70%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || || | || | || ||||||||||| ||| || | Sbjct 45171 CTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAA 45112 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | ||||||||| ||| ||| | | ||||||||| || || ||| | | Sbjct 45111 GATGAGACGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTT 45052 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || ||||| || | |||||| ||| | || ||||| || || || || || ||| Sbjct 45051 GTCG--ATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTCCCTGTCAGGGTCTTC 44994 Query 48713 ACAAAAATCTGCATCGTG 48730 || || |||||||||||| Sbjct 44993 ACGAAGATCTGCATCGTG 44976 >seq192 Length=981986 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/198 (70%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||| || || || | ||| | |||||||||||||| ||| || | Sbjct 848988 CTCCTTCTGGATGTTATAGTCGGCGAGCGTTCGTCCATCCTCCAGCTGCTTGCCGGCGAA 848929 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | ||||||||| ||| ||| | | ||||||||| || || ||| | | Sbjct 848928 GATGAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTT 848869 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || ||||| || | |||||| ||| | || ||||| || || || || || ||| Sbjct 848868 GTCG--ATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTC 848811 Query 48713 ACAAAAATCTGCATCGTG 48730 || || ||||||||| || Sbjct 848810 ACGAAGATCTGCATCTTG 848793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421227984056522