Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq4080 111 8e-20 seq969 107 1e-18 seq1597 104 1e-17 seq1670 86.0 3e-12 >seq4080 Length=1237209 Score = 111 bits (122), Expect = 8e-20 Identities = 72/80 (90%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | |||||||| ||||||||||||||||||||| ||||||| || Sbjct 833657 AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACCACGCTCTGAC 833598 Query 11512 CAACTGAGCTAATGGGCCGT 11531 ||||||||||||| |||||| Sbjct 833597 CAACTGAGCTAATAGGCCGT 833578 >seq969 Length=797158 Score = 107 bits (118), Expect = 1e-18 Identities = 76/88 (86%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| | | ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 196741 AAAAAAAATACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 196800 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGTC 11532 |||| ||||||||||||||| |||| || Sbjct 196801 CTCTAACCAACTGAGCTAATAGGCCATC 196828 Score = 102 bits (112), Expect = 4e-17 Identities = 89/109 (82%), Gaps = 8/109 (7%) Strand=Plus/Minus Query 11428 GAAATATAGAATTAATAAAAAATCAAATTG----GCCCATGAAAGGATCGAACCTTCGAC 11483 ||||||| ||||| |||||| |||||| ||||||| | | ||||| || |||| Sbjct 688865 GAAATATT--ATTAA--AAAAATTAAATTGAGTGGCCCATGCAGGTCTCGAATCTGCGAC 688810 Query 11484 CTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 ||||||||||||||||| ||||||| ||||||||||||||| |||| || Sbjct 688809 CTTCGCGTTATTAGCACCACGCTCTGACCAACTGAGCTAATAGGCCTTC 688761 >seq1597 Length=13941 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 5840 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 5781 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 5780 TGAGCTAATAGGCC 5767 >seq1670 Length=681292 Score = 86.0 bits (94), Expect = 3e-12 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 11452 AAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| |||| ||| | | |||||||| |||||||| ||||||||||| |||||||| | Sbjct 73641 AAATGTGGCACATACAGGTCTCGAACCTGCGACCTTCACGTTATTAGCATGACGCTCTAA 73582 Query 11511 CCAACTGAGCTAATGGGC 11528 |||||||||||||| ||| Sbjct 73581 CCAACTGAGCTAATAGGC 73564 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261476788729672