Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3303 129 9e-26 seq437 125 1e-24 seq1725 123 4e-24 seq4277 122 1e-23 seq470 120 5e-23 seq4397 116 6e-22 seq4108 116 6e-22 seq1115 116 6e-22 seq3038 114 2e-21 seq2191 111 2e-20 seq1503 109 9e-20 seq4496 107 3e-19 seq4416 107 3e-19 >seq3303 Length=508437 Score = 129 bits (142), Expect = 9e-26 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| | ||||| | | || Sbjct 271215 CTGCGCGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGAGGCTGGCCAGGAGGGGC 271156 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| ||||||| | |||| || |||| || | || | ||||||||| Sbjct 271155 GGCGTCAAGCGCATCTCTGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 271096 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| || |||||||| || ||||| ||| Sbjct 271095 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACGGAGCACGCCCGCCGCAAGACCGTC 271036 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| |||||||| ||||||| || | || || || ||||| Sbjct 271035 ACCGCCATGGATGTCGTCTACGCGCTCAAGCGCCAGGGCCG 270995 >seq437 Length=53425 Score = 125 bits (138), Expect = 1e-24 Identities = 173/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| || || || |||||||| || ||||||||||| || ||| Sbjct 4240 GCGAAGCGGCACCGCAAGGTGCTCCGTGACAACATCCAGGGGATCACCAAGCCGGCGATC 4181 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || | ||||| | | || || |||||||| |||| || || |||| || |||| Sbjct 4180 CGGAGGCTGGCGAGGAGGGGCGGCGTCAAGCGCATCTCCGGGCTGATCTACGAGGAGACC 4121 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | |||||||||||| ||| ||| |||| || || || ||| || ||| Sbjct 4120 CGCGGCGTGCTCAAGATCTTCCTCGAGAACGTGATCCGCGACGCCGTCACCTACACGGAG 4061 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || ||||| |||||| ||||||| ||||||| || | || || || ||| Sbjct 4060 CACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGC 4001 Query 16673 CG 16674 || Sbjct 4000 CG 3999 >seq1725 Length=658189 Score = 123 bits (136), Expect = 4e-24 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || || ||||| || ||||||||||| || ||||| | ||||| | | || Sbjct 546840 CTGCGCGACAATATCCAGGGCATCACCAAGCCGGCGATCCGCAGGCTGGCGAGGAGGGGC 546899 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| |||| || | |||| || |||| || | || | ||||||||| Sbjct 546900 GGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 546959 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| ||||| || ||| ||||||||||| || ||||| ||| Sbjct 546960 CTCGAGAACGTCATCCGCGATGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTC 547019 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| || | || || || ||||| Sbjct 547020 ACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCG 547060 >seq4277 Length=242750 Score = 122 bits (134), Expect = 1e-23 Identities = 175/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | || || || || |||||||| || ||||||||||| || | Sbjct 68420 CGCCAAGCGTCACCGCAAGGTC-CTCCGCGACAACATCCAGGGTATCACCAAGCCGGCGA 68362 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| | ||||| | | || || || ||||| |||| || || |||| || |||| Sbjct 68361 TCCGGAGGCTGGCGAGGAGGGGCGGCGTGAAGCGCATCTCGGGGCTGATCTACGAGGAGA 68302 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||||||||||| ||| ||| |||| || || || || || | Sbjct 68301 CCCGCGGCGTGCTCAAGATCTTCCTGGAGAACGTCATCCGCGACGCCGTCACATACACGG 68242 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || ||||| |||||| ||||||| ||||||| || | || || || | Sbjct 68241 AGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGG 68182 Query 16671 GCCG 16674 |||| Sbjct 68181 GCCG 68178 >seq470 Length=949554 Score = 120 bits (132), Expect = 5e-23 Identities = 170/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || || ||||| || ||||| |||||||| ||||| |||||||| | | ||| Sbjct 583962 CTGCGCGACAATATCCAGGGCATCACGAAGCCAGCGATCCGGCGTCTGGCGAGGAGAGGT 583903 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || || |||| || |||| || | || | ||||||||| Sbjct 583902 GGCGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 583843 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || || ||| || |||||||| || ||||| ||| Sbjct 583842 CTGGAGAACGTCATCCGCGACGCCGTCACCTACACGGAGCACGCCCGTCGCAAGACCGTC 583783 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| ||||||| | || || ||| | || || || ||||| | | || ||||| || Sbjct 583782 ACCGCCATGGACGTGGTGTACGCACTCAAGCGACAGGGCCGCACCCTCTACGGTTTCGG 583724 >seq4397 Length=197524 Score = 116 bits (128), Expect = 6e-22 Identities = 171/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | || || || |||||||| || ||||| ||||| || ||| Sbjct 109096 GCGAAGCGTCACCGGAAGGTGCTCCGCGACAACATCCAGGGGATCACGAAGCCGGCGATC 109037 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || | ||||| | | || || || ||||| |||| || | |||| || |||| | Sbjct 109036 CGGAGGCTGGCGAGGAGGGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACT 108977 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | ||||||||||| ||| ||| |||| || || || ||| |||||| Sbjct 108976 CGCGGGGTGCTCAAGATCTTCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACCGAG 108917 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || ||||| |||||| ||||||| ||||||| || | || || || ||| Sbjct 108916 CACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGC 108857 Query 16673 CG 16674 || Sbjct 108856 CG 108855 >seq4108 Length=338973 Score = 116 bits (128), Expect = 6e-22 Identities = 169/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || || || || ||||| | | || Sbjct 184865 CTCCGCGACAACATCCAGGGGATCACCAAGCCGGCGATACGGCGGCTGGCGAGGAGGGGC 184924 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| ||||||| | |||| || |||| || | ||| ||||||| ||| Sbjct 184925 GGCGTGAAGCGCATCTCTGGGCTTATCTACGAGGAGACCCGCGGCGTTCTGAAGATTTTC 184984 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| ||| |||| ||||| || ||| || || ||||| || ||||| ||| Sbjct 184985 TTGGAGAACGTCATCCGCGATGCCGTCACCTACACGGAACACGCCCGCCGCAAGACCGTC 185044 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || ||||||| ||||||| || | || || || ||||| | | |||||||| || Sbjct 185045 ACTGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCGCACCCTCTATGGTTTCGG 185103 >seq1115 Length=759221 Score = 116 bits (128), Expect = 6e-22 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || || |||||||| || ||||| |||||||| ||||| ||||| ||| | | || Sbjct 140932 TCTGCGCGACAACATCCAGGGCATCACGAAGCCAGCGATCCGGCGTCTCGCTAGGAGGGG 140873 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || || ||||| |||| || || |||| || |||| || | || | |||||||| Sbjct 140872 CGGCGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTT 140813 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| ||| || | || || || ||| || |||||||| || ||||| || Sbjct 140812 CCTGGAGAACGTCATTCGCGACGCCGTCACCTACACGGAGCACGCCCGCCGCAAGACCGT 140753 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| || | || || || ||||| Sbjct 140752 TACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCG 140711 >seq3038 Length=501349 Score = 114 bits (126), Expect = 2e-21 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| || ||||| |||||||| | | || Sbjct 374315 CTGCGCGACAACATCCAGGGCATCACGAAGCCGGCGATCCGGCGTCTGGCGAGGAGGGGC 374256 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| ||||||| || |||| || |||| || | || | ||||||||| Sbjct 374255 GGCGTGAAGCGCATCTCTGGGCTGATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 374196 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| || |||||||| || ||||| ||| Sbjct 374195 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACGGAGCACGCCCGCCGCAAGACCGTC 374136 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||||| |||| || || | || || || || || Sbjct 374135 ACTGCCATGGACGTCGTATACGCGCTCAAGCGCCAGGGTCG 374095 >seq2191 Length=649015 Score = 111 bits (122), Expect = 2e-20 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| | ||||| | | || Sbjct 408406 CTCCGCGACAACATCCAGGGGATCACCAAGCCGGCGATCCGGAGGCTGGCGAGGAGGGGC 408465 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| || | || | ||||||||| Sbjct 408466 GGCGTGAAGCGCATCTCGGGCCTCATCTACGAGGAGACCCGCGGGGTACTCAAGATCTTC 408525 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || || ||| || |||||||| || ||||| ||| Sbjct 408526 CTGGAGAACGTCATCCGCGACGCCGTCACCTACACGGAGCACGCCCGCCGCAAGACCGTC 408585 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| || | || || || ||||| Sbjct 408586 ACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCG 408626 >seq1503 Length=704043 Score = 109 bits (120), Expect = 9e-20 Identities = 172/244 (70%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | | || || || || |||||||| || ||||||||||| || | Sbjct 410286 CGCCAAGCGTCACCGTAAGGTC-CTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGA 410344 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| | |||| | | || || || ||||| |||| || || |||| || |||| Sbjct 410345 TCCGGAGGTTGGCGAGGAGGGGAGGCGTGAAGCGCATCTCGGGGCTGATCTACGAGGAGA 410404 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||||||||||| ||| ||| |||| || || | || || | Sbjct 410405 CCCGCGGCGTCCTCAAGATCTTCCTGGAGAACGTCATCCGCGACGCCGTGACATACACGG 410464 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || ||||| |||||| ||||||| ||||||| || | || || || | Sbjct 410465 AGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGG 410524 Query 16671 GCCG 16674 |||| Sbjct 410525 GCCG 410528 >seq4496 Length=159156 Score = 107 bits (118), Expect = 3e-19 Identities = 169/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| || || || |||||||| || ||||||||||| || ||| Sbjct 121624 GCGAAGCGCCACCGCAAGGTGCTCCGCGACAACATCCAGGGGATCACCAAGCCGGCCATC 121683 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || | || || | | || || || ||||| |||| || | |||| || |||| Sbjct 121684 CGGAGGCTTGCGAGGAGGGGCGGCGTGAAGCGCATCTCCGGGCTCATCTACGAGGAGACC 121743 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | ||||||||| | ||| ||| |||| || ||| || ||| || ||| Sbjct 121744 CGCGGCGTGCTCAAGATCTTCTTGGAGAACGTCATCCGCGACGCTGTCACCTACACGGAG 121803 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || ||||| |||||| ||||||| |||| || || |||| || || ||| Sbjct 121804 CACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTGTACGCGCTGAAGCGCCAGGGC 121863 Query 16673 CG 16674 || Sbjct 121864 CG 121865 >seq4416 Length=188373 Score = 107 bits (118), Expect = 3e-19 Identities = 169/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | || || || |||||||| || ||||||||||| || ||| Sbjct 52157 GCGAAGCGTCACCGGAAGGTGCTCCGCGACAACATCCAGGGGATCACCAAGCCGGCGATC 52098 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || | ||||| | | || || || ||||| |||| || | |||| || |||| Sbjct 52097 CGGAGGCTGGCGAGGAGGGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACC 52038 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | ||||||||||| ||| ||| |||| || || || ||| || || Sbjct 52037 CGCGGGGTGCTCAAGATCTTCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACGGAA 51978 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || ||||| |||||| ||||||| ||||||| || | || || || ||| Sbjct 51977 CACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGC 51918 Query 16673 CG 16674 || Sbjct 51917 CG 51916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79071065503746