Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq4204 571 7e-158 seq3130 477 1e-129 seq3676 370 1e-97 seq4136 178 2e-39 seq2035 152 6e-32 seq4428 131 2e-25 seq4131 95.1 2e-14 seq4268 93.3 5e-14 seq4517 91.5 2e-13 >seq4204 Length=279751 Score = 571 bits (632), Expect = 7e-158 Identities = 704/959 (73%), Gaps = 25/959 (3%) Strand=Plus/Minus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 |||||| | ||| | || |||||||| ||||| || || | || ||||| || || Sbjct 216748 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 216689 Query 135434 ATGATTCCTACTCTTCTCG-CAGCTGCTATCTGC-TTTATTGTTGCTTTCATCGCTGCAC 135491 ||||| ||||| ||| | | | || || |||| |||||| | || |||||| | || | Sbjct 216688 ATGATCCCTAC-CTTATTGACTGCAACT-TCTGTATTTATTATCGCCTTCATCACAGCCC 216631 Query 135492 CTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATA 135551 ||| || |||||||| || || || || |||||| || ||||| || | || ||||| | Sbjct 216630 CTCTAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATGGAAACA 216571 Query 135552 ACATCATCTCTGGTGCTGTTATCCCTTCTAGCAACGCCATCGGCCTTCACTTCTATCCCA 135611 | || ||||||||||| |||| ||| || || ||||| | ||||| || || | Sbjct 216570 ATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAA 216511 Query 135612 TCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTGG 135671 | ||||||||||| ||| ||||||||||| |||| ||||| || |||||| | ||| | | Sbjct 216510 TTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTG 216451 Query 135672 TCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTACC 135731 | | |||||| | | ||||| | ||| |||||||| ||||||||||| || || Sbjct 216450 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCC 216391 Query 135732 GACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACTG 135791 | ||||||||||| ||||||||| ||| || || | ||| ||||| Sbjct 216390 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTTAGC---------------TACTG 216346 Query 135792 CTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGGCA 135851 |||||||| || | || || |||| ||||| |||| |||||||||||| | || | Sbjct 216345 CTGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 216286 Query 135852 TTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCATC 135911 | ||||| ||||| |||| ||| |||| ||||||||||| |||||||| || ||||||| Sbjct 216285 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATC 216226 Query 135912 CTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCATG 135971 | || |||||||| || || ||||| || ||||| ||||| || ||| ||||||||||| Sbjct 216225 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 216166 Query 135972 GATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTATG 136031 | || | || ||||||||| | | | || || ||||| ||||| || | | Sbjct 216165 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGG 216106 Query 136032 GTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTCG 136091 |||||| || |||||||| ||||||||||| || ||||| || |||||||||||||| | Sbjct 216105 GTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTG 216046 Query 136092 GTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTTG 136151 | || | |||||||||||||| || |||||||||||||| ||||||| ||| | | Sbjct 216045 GCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGG 215986 Query 136152 CTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACGATGGCGTTCA 136211 ||||||||||||| || || || ||||| |||| | || | ||| ||||| |||| Sbjct 215985 CTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 215926 Query 136212 ACCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCT---GAAGGTCGTGTACTCA 136268 |||| || |||||||| |||||||| || |||| | | ||||||| || | | Sbjct 215925 ACCTAAACGGATTCAATTTCAACCAATC---TGTACTTGATAGCCAAGGTCGCGTTATTA 215869 Query 136269 ACACCTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGAGCGT 136327 | || ||||| ||| | | || |||||| ||| |||||||| || |||||||| ||| Sbjct 215868 ATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGT 215810 >seq3130 Length=1765 Score = 477 bits (528), Expect = 1e-129 Identities = 529/699 (76%), Gaps = 6/699 (1%) Strand=Plus/Minus Query 135389 ACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTGATGATTCCTACTCTT 135448 || |||||||| ||||| || || | || ||||| || ||||||| ||||| ||| Sbjct 1348 ACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTAC-CTT 1290 Query 135449 CTCG-CAGCTGCTATCTGC-TTTATTGTTGCTTTCATCGCTGCACCTCCCGTCGATATTG 135506 | | | || || |||| |||||| | || |||||||| || ||||| || ||||||| Sbjct 1289 ATTGACTGCAACT-TCTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTG 1231 Query 135507 ACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATAACATCATCTCTGGTG 135566 | || || || || |||||| |||||||| || | || ||||| || || |||||||||| Sbjct 1230 ATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTG 1171 Query 135567 CTGTTATCCCTTCTAGCAACGCCATCGGCCTTCACTTCTATCCCATCTGGGAAGCTGCTT 135626 | |||| ||| || || ||||| | ||||| || || || ||||||||||| | Sbjct 1170 CCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCAT 1111 Query 135627 CTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTGGTCTTCCACTTCCTTA 135686 || ||||||||||| |||| ||||| || |||||| | ||| | || | |||||| | Sbjct 1110 CTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTAC 1051 Query 135687 TCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTACCGACTGGGTATGCGCC 135746 | ||||| | ||| |||||||| ||||||||||| || ||| ||||||||||| | Sbjct 1050 TTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTC 991 Query 135747 CTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACTGCTGTTTTCCTGGTCT 135806 |||||||| ||| || || ||||| |||||||| |||||||||||||||||| || | | Sbjct 990 CTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTT 931 Query 135807 ACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGGCATTTCTGGAACTTTTA 135866 | || |||| ||||| |||| |||||||||||| | || || ||||| ||||| | Sbjct 930 ATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCA 871 Query 135867 ACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCATCCTTTCCACATGTTGG 135926 ||| ||| |||| ||||||||||| |||||||| || |||||||| || |||||||| | Sbjct 870 ACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAG 811 Query 135927 GAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCATGGATCTCTTGTCACCT 135986 | || ||||| || ||||||||||| || ||| |||||| ||||| || | || |||| Sbjct 810 GTGTAGCTGGTGTATTCGGTGGTTCCCTATTCAGTGCTATACATGGTTCCTTGGTAACCT 751 Query 135987 CTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTATGGTTACAAGTTCGGTC 136046 ||||| | | | || || ||||| ||||| || ||||||||| || |||| Sbjct 750 CTAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGATGGTTACAGATTTGGTC 691 Query 136047 AAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTT 136085 |||| |||||||||| || ||||| || |||||||||| Sbjct 690 AAGAGGAAGAGACTT--AATATTGTGGCCGCTCATGGTT 654 >seq3676 Length=461187 Score = 370 bits (410), Expect = 1e-97 Identities = 448/605 (74%), Gaps = 11/605 (2%) Strand=Plus/Plus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 |||||| | ||| | | |||||||| ||||| || || | || |||| | || Sbjct 288189 TTCTGCAACTGGATAAATAGCACCGAAAACCGTCTTTACATCGGATGGTCCGATGTTTTG 288248 Query 135434 ATGATTCCTACTCTTCTCGCAGCTGCTA--TCTGC-TTTATTGTTGCTTTCATCGCTGCA 135490 ||||| ||||| ||| | | |||| | |||| |||||| | || |||||||| || Sbjct 288249 ATGATCCCTAC-CTTATT--AACTGCAACTTCTGTATTTATTATCGCCTTCATCGCAGCC 288305 Query 135491 CCTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAAT 135550 ||||| || |||||||| || || || || |||||| | |||| || | || ||||| Sbjct 288306 CCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTCGATTCTTTACTTTATGGAAAC 288365 Query 135551 AACATCATCTCTGGTGCTGTTATCCCTTCTAGCAACGCCATCGGCCTTCACTTCTATCCC 135610 || || ||||||||||| |||| ||| || || ||||| | ||||| || || Sbjct 288366 AATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCA 288425 Query 135611 ATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTG 135670 || ||||||||||| ||| ||||||||||| |||| ||||| || |||||| | ||| | Sbjct 288426 ATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATT 288485 Query 135671 GTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTAC 135730 || | |||||| | | ||||| | ||| |||||||| ||||||||||| || | Sbjct 288486 GTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTC 288545 Query 135731 CGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACT 135790 || ||||||||||| ||||||||| ||| || || ||||| |||||||| | ||||||| Sbjct 288546 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACT 288605 Query 135791 GCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGGC 135850 ||||||||| || | || || |||| ||||| |||| |||||||||||| | || Sbjct 288606 GCTGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGA 288665 Query 135851 ATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCAT 135910 || ||||| ||||| |||| ||| |||| ||||||| ||| |||||||| || |||||| Sbjct 288666 ATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGTAGAGCACAACATCCTTATGCAT 288725 Query 135911 CCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCAT 135970 || || | |||||| || || |||| || || ||||| || ||| |||||||||| Sbjct 288726 CCATTTCGCATGTTAGGTGTAGCTG-----TTTGGCGGTTCCCTATTCAGTGCTATGCAT 288780 Query 135971 GGATC 135975 || || Sbjct 288781 GGTTC 288785 >seq4136 Length=310402 Score = 178 bits (196), Expect = 2e-39 Identities = 185/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 136040 TTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTCGGTCGTCTG 136099 || |||||||| ||||||||||| || ||||| || |||||||||||||| || || | Sbjct 3273 TTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCCGATTA 3214 Query 136100 ATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTTGCTGCTTGG 136159 |||||||||||||| || |||||||||||||| ||||||| ||| | ||||||||| Sbjct 3213 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 3154 Query 136160 CCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACGATGGCGTTCAACCTCAAT 136219 ||||| || || || ||||| |||| | || | ||| ||||| |||||||| || Sbjct 3153 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAAC 3094 Query 136220 GGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTCAACACCTGGGCA 136279 |||||||| |||||||| || | || | ||||||| || | || || ||||| Sbjct 3093 GGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCT 3034 Query 136280 GAT 136282 ||| Sbjct 3033 GAT 3031 >seq2035 Length=9416 Score = 152 bits (168), Expect = 6e-32 Identities = 150/194 (77%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138601 CTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCCGTCATGGGTCTCT 138660 ||||| ||||| |||||| | | ||||||||||| ||||| ||||||| ||| | | Sbjct 3845 CTTTTTTCAATAAACGTTGGTTATATTTCTTTATGCTATTTGTACCCGTCACCGGTTTAT 3786 Query 138661 GGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAGCGTATGATTTCGTAT 138720 ||| ||| |||||| | | || || ||||| |||||||| || ||||| || || | Sbjct 3785 GGATGAGTGCTATTGGCGTAGTCGGCCTAGCTCTGAACCTACGTGCCTATGACTTTGTTT 3726 Query 138721 CGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCTACACCAAGAACATTC 138780 | | ||||| |||||||| |||||||||||||| ||||| ||||||||||| || ||| Sbjct 3725 CCTAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTG 3666 Query 138781 TTCTGAATGAAGGT 138794 || | ||||| ||| Sbjct 3665 TTTTAAATGAGGGT 3652 >seq4428 Length=185154 Score = 131 bits (144), Expect = 2e-25 Identities = 125/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 135832 TGATGGTATGCCGCTTGGCATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGA 135891 |||||||||||| | | || ||||| ||||| |||| ||| |||| ||||||||||| Sbjct 19699 TGATGGTATGCCTTTAGAAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGA 19640 Query 135892 ACACAACATTCTCATGCATCCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTC 135951 ||||||| || |||||| | || |||||||| || || ||||| || ||||| ||||| Sbjct 19639 GTACAACATCCTTATGCATTCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTC 19580 Query 135952 TCTGTTCTCTGCTATGCATGGATCTCTTGTCACCTCTAGT 135991 || ||| |||| ||||||| || | || ||||||||| Sbjct 19579 CCTATTCAGTGCTTTGCATGGTTCCTTGGTAACCTCTAGT 19540 >seq4131 Length=315116 Score = 95.1 bits (104), Expect = 2e-14 Identities = 121/167 (72%), Gaps = 6/167 (4%) Strand=Plus/Plus Query 135599 CACTTCTATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCT 135658 ||||| || | || ||||||||||| | | ||||||||||| |||| ||| | || ||| Sbjct 226360 CACTTTTACCTAATTTGGGAAGCTGCATATGTTGATGAGTGGTTATACAATAGCGGCCCT 226419 Query 135659 TATCAACTAGTGGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGG 135718 ||| | ||| | || | |||||| | | | | | || |||||||| |||||| Sbjct 226420 TATGAGCTAATTGTTCTACACTTCTTACTAGCT------TGTTGTATGGGTCGTGAGTGG 226473 Query 135719 GAACTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTA 135765 ||||| || | | ||||||||||| ||||||||| ||| || || Sbjct 226474 GAACTGAGTTTCAGTCTGGGTATGCGTCCTTGGATTGTTGTTGCATA 226520 >seq4268 Length=1125959 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 138723 CAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCTACACCAAGAACATTCTT 138782 || ||||| |||||||| |||||||||||||| ||||| ||||||||||| || |||||| Sbjct 683086 CAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTT 683027 Query 138783 CTGAATGAAGGTCTGCGTGCCTGGAT 138808 | || || ||| | ||||| ||||| Sbjct 683026 TTAAACGAGGGTATTCGTGCGTGGAT 683001 >seq4517 Length=143961 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 138570 AACCGTTACTGGTCGCAAATCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTC 138629 ||||| | || || |||||||||| |||||||| ||||| |||||| | || ||| Sbjct 80646 AACCGCTTTTGATCCTAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTC 80587 Query 138630 TTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTT 138689 |||||||| ||||| ||||||| ||| | |||| ||| |||||| | | || || Sbjct 80586 TTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTA 80527 Query 138690 GCTCTTAACCTAC 138702 ||||| ||||||| Sbjct 80526 GCTCTGAACCTAC 80514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627932504108800