Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq4204 509 5e-140 seq3130 407 4e-109 seq3676 331 3e-86 seq4136 154 4e-33 seq4428 143 8e-30 seq203 93.3 1e-14 >seq4204 Length=279751 Score = 509 bits (564), Expect = 5e-140 Identities = 698/976 (72%), Gaps = 17/976 (2%) Strand=Plus/Minus Query 19299 TGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCT 19358 ||| | || || ||||| ||||| ||||| | || ||||| || || | ||||| ||| Sbjct 216739 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 216680 Query 19359 TGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGAT 19418 |||| | |||| ||| || ||||| ||||||| ||| |||| || | |||||| Sbjct 216679 ACCTTATTGACTGCAACTTCTGTATTTATTATCGCCTTCATCACAGCCCCTCTAGTAGAT 216620 Query 19419 ATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCT 19478 || ||||| || |||||||| ||||| | || ||| | || |||||||||||||| ||| Sbjct 216619 ATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATGGAAACAATATTATCTCT 216560 Query 19479 GGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCC 19538 || || | |||| | || || || ||| |||||||||| || || |||||||| Sbjct 216559 GGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCT 216500 Query 19539 GGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTC 19598 | || | ||||||||||||||||| ||||| || ||| | || |||| | |||||| Sbjct 216499 GCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTC 216440 Query 19599 TTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATG 19658 ||| | || ||||| || ||| | |||||||||| || | | | || ||| Sbjct 216439 TTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATG 216380 Query 19659 AGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTC 19718 | || ||||| || |||||| ||| | |||||| ||||| Sbjct 216379 CGTCCTTGGATTGCTGTTGCATATTTAGCTAC---------------TGCTGT-TTTCTT 216336 Query 19719 G-TTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTAC 19777 | |||| || |||| ||||| ||||| ||||||||||||| | || || |||||||| Sbjct 216335 GATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTAC 216276 Query 19778 TTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACAT 19837 ||| ||||||||| | |||||||| ||||| ||||| |||||||||||||| || ||||| Sbjct 216275 TTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACAT 216216 Query 19838 GCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGT 19897 | | ||||| ||||| |||||||| || || || ||| ||||||||| || ||||| Sbjct 216215 GTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGT 216156 Query 19898 TACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTT 19957 || || | |||| |||||| ||||| ||| ||| || | || || | || Sbjct 216155 AACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAGATT 216096 Query 19958 CGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGAT 20017 || ||||| |||||||| ||||||||||| || || || || |||||||| |||| || Sbjct 216095 TGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCCGATTAAT 216036 Query 20018 ATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCC 20077 || ||||||||| ||| || || |||||||||||||| ||||| | ||| ||| || Sbjct 216035 CTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCC 215976 Query 20078 CGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGG 20137 || || || || ||| | || | | || || | ||||||||||||||||| || || Sbjct 215975 TGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGG 215916 Query 20138 TTTTAACTTTAACCAGTCAGTAGTTGATGTCAACGGAAAGATAATCCCAACATGGGCTGA 20197 || || || ||||| || ||| ||||| | | || | || || |||||||| Sbjct 215915 ATTCAATTTCAACCAATCTGTACTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGA 215856 Query 20198 TGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTT 20257 | | | || | ||||| || || | ||||| |||||||| || |||||||| ||||| Sbjct 215855 TATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTT 215796 Query 20258 CCCACTTGATTTAGCT 20273 ||| || || ||||| Sbjct 215795 CCCTCTAGACCTAGCT 215780 >seq3130 Length=1765 Score = 407 bits (450), Expect = 4e-109 Identities = 510/696 (73%), Gaps = 4/696 (1%) Strand=Plus/Minus Query 19305 ACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCTTGCTTA 19364 || || ||||| ||||| ||||| | || ||||| || || | ||||| ||| |||| Sbjct 1348 ACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTA 1289 Query 19365 CTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATAGAT 19424 | |||| ||| || ||||| ||||||| |||||||| || || |||||||| ||| Sbjct 1288 TTGACTGCAACTTCTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGAT 1229 Query 19425 GGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAGCA 19484 || || |||||||| ||||| || || ||| | || |||||||||||||| ||||| || Sbjct 1228 GGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCC 1169 Query 19485 GTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCACT 19544 | |||| | || || || ||| |||||||||| || || |||||||| | || Sbjct 1168 ATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCT 1109 Query 19545 TTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATA 19604 | ||||||||||||||||| ||||| || ||| | || |||| | ||||||||| | Sbjct 1108 GTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTT 1049 Query 19605 GGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAGACCA 19664 || ||||| || ||| | |||||||||| || | | | || ||| | || Sbjct 1048 GGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCT 989 Query 19665 TGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCG-TTTA 19723 ||||| || |||||| |||| || | |||| ||| |||||| ||||| | |||| Sbjct 988 TGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATTTA 930 Query 19724 CCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAA 19783 || |||| ||||| ||||| ||||||||||||| | || || ||||||||||| || Sbjct 929 TCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAA 870 Query 19784 CTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGG 19843 ||||||| | |||||||| ||||| ||||| |||||||||||||| || |||||| | || Sbjct 869 CTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGG 810 Query 19844 TGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTC 19903 ||| ||||| ||||||||||| || || ||| |||||| || || ||||| || || Sbjct 809 TGTAGCTGGTGTATTCGGTGGTTCCCTATTCAGTGCTATACATGGTTCCTTGGTAACCTC 750 Query 19904 CTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCA 19963 | |||| |||||| ||||| ||| ||| || |||| || | || || || Sbjct 749 TAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGATGGTTACAGATTTGGTCA 690 Query 19964 AGATGAAGAGACATATAATATTGTCGCTGCACACGG 19999 ||| |||||||| ||||||||| || || || || Sbjct 689 AGAGGAAGAGAC--TTAATATTGTGGCCGCTCATGG 656 >seq3676 Length=461187 Score = 331 bits (366), Expect = 3e-86 Identities = 424/582 (73%), Gaps = 7/582 (1%) Strand=Plus/Plus Query 19308 AGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCTTGCTTACTA 19367 || ||||| ||||| ||||| | || |||| | || | ||||| ||| |||| || Sbjct 288207 AGCACCGAAAACCGTCTTTACATCGGATGGTCCGATGTTTTGATGATCCCTACCTTATTA 288266 Query 19368 GCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATAGATGGC 19427 |||| ||| || ||||| ||||||| |||||||| || || |||||||| ||||| Sbjct 288267 ACTGCAACTTCTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGT 288326 Query 19428 ATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAGCAGTA 19487 || |||||||| |||| || || ||| | || |||||||||||||| ||||| || | Sbjct 288327 ATTCGTGAGCCTGTTTTCGATTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATT 288386 Query 19488 GTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCACTTTA 19547 |||| | || || || ||| |||||||||| || || |||||||| | || | Sbjct 288387 ATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTT 288446 Query 19548 GATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGA 19607 ||||||||||||||||| ||||| || ||| | || |||| | ||||||||| | || Sbjct 288447 GATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGT 288506 Query 19608 GTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAGACCATGG 19667 ||||| || ||| | |||||||||| || | | | || ||| | || ||| Sbjct 288507 GTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGG 288566 Query 19668 ATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCG-TTTACCC 19726 || || |||||| |||| || | ||| ||| |||||| ||||| | |||| || Sbjct 288567 ATTGCTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGCTGT-TTTCTTGATTTATCC 288625 Query 19727 ATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTT 19786 |||| ||||| ||||| ||||||||||||| | || || ||||||||||| ||||| Sbjct 288626 TATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTT 288685 Query 19787 TATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGT 19846 |||| | |||||||| | ||| ||||| |||||||||||||| || | |||| | ||||| Sbjct 288686 TATGATTGTATTCCAGGTAGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTGT 288745 Query 19847 TGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 19888 |||| || || || || || ||| ||||||||| || Sbjct 288746 AGCTG-----TTTGGCGGTTCCCTATTCAGTGCTATGCATGG 288782 >seq4136 Length=310402 Score = 154 bits (170), Expect = 4e-33 Identities = 164/215 (76%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 19952 TAAG-TTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGA 20010 |||| || || ||||| |||||||| ||||||||||| || || || || |||||||| Sbjct 3278 TAAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCC 3219 Query 20011 GATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTA 20070 |||| || || ||||||||| ||| || || |||||||||||||| ||||| | ||| Sbjct 3218 GATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTG 3159 Query 20071 CTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACC 20130 ||| || || || || || ||| | || | | || || | |||||||||||||||| Sbjct 3158 CTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACC 3099 Query 20131 TTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT 20165 | || || || || || ||||| || ||||||||| Sbjct 3098 TAAACGGATTCAATTTCAACCAATCTGTAGTTGAT 3064 >seq4428 Length=185154 Score = 143 bits (158), Expect = 8e-30 Identities = 145/189 (77%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 19748 TGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGA 19807 ||||||||||||| | | || ||||||||||| ||||||||| | |||||||| ||||| Sbjct 19699 TGATGGTATGCCTTTAGAAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGA 19640 Query 19808 ACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATC 19867 |||| |||||||||||| | || |||||| | ||||| ||||| |||||||| || || Sbjct 19639 GTACAACATCCTTATGCATTCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTC 19580 Query 19868 TCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGA 19927 || ||| |||| |||| || ||||| || || | |||| |||||| ||||| Sbjct 19579 CCTATTCAGTGCTTTGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGA 19520 Query 19928 GGATGTATC 19936 ||| ||| Sbjct 19519 AAATGAATC 19511 >seq203 Length=971741 Score = 93.3 bits (102), Expect = 1e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 20115 ACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGATGTCAACGGA 20174 ||||||||||||||||| || || || || || ||||| || ||||||||| | | || Sbjct 777859 ACTATGGCTTTCAACCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGT 777918 Query 20175 AAGATAATCCCAACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATG 20234 | || || ||||||||| | | || | ||||| || || | ||||| ||| Sbjct 777919 CGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATG 777978 Query 20235 CACGAGCGCAATGCTCATAACTTCCCACTTGATTTAGCT 20273 ||||| || |||||||| |||||||| || || ||||| Sbjct 777979 CACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCT 778017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144433843666632