Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09]
4,522 sequences; 603,989,347 total letters
Query= NC_006883.2
Length=252401
Score E
Sequences producing significant alignments: (Bits) Value
seq4204 486 3e-132
seq3130 363 3e-95
seq3676 291 1e-73
seq203 143 4e-29
seq4136 141 2e-28
seq4428 123 4e-23
>seq4204
Length=279751
Score = 486 bits (538), Expect = 3e-132
Identities = 700/985 (71%), Gaps = 19/985 (2%)
Strand=Plus/Minus
Query 211570 TTCTGCGACTGGGTAAC-ATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCT 211628
|||||| ||||| |||| | || | || ||| | | || | || ||||| |||||| |
Sbjct 216748 TTCTGCAACTGGATAACTAGCACCGAA-AACCGTCTTTACATCGGATGGTTCGGTGTTTT 216690
Query 211629 TATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATCGTAGCATTCATCGCAGCAC 211687
|||||||| | ||| | | ||||||| | ||||| | || |||||| |||| |
Sbjct 216689 GATGATCCC-TACCTTATTGACTGCAACTTCTGTATTTATTATCGCCTTCATCACAGCCC 216631
Query 211688 CTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACA 211747
||| || ||||| || || || ||||| || || || |||| || | ||||| ||||
Sbjct 216630 CTCTAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATGGAAACA 216571
Query 211748 ACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTA 211807
| || ||||||||||| || |||| |||| || ||||| || ||||| || || |
Sbjct 216570 ATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAA 216511
Query 211808 TCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTGGTAA 211867
| |||||||| ||| || ||||||||||| | |||||||| || ||||| || | |
Sbjct 216510 TTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTG 216451
Query 211868 TCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAACTTTCATACC 211927
| | |||||| | | || | | || ||||| | |||||||||| | ||
Sbjct 216450 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCC 216391
Query 211928 GTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCG 211987
|| | ||||||||||||||||| |||||| |||| ||| |||
Sbjct 216390 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTTAGCTACTG--------------- 216346
Query 211988 CTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTA 212047
|||| ||| | |||| || | ||||| || ||||| || |||||||||||||| |
Sbjct 216345 CTGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 216286
Query 212048 TATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACC 212107
|||| || || |||||||| ||| | |||||||| ||||| || |||||||||||||| |
Sbjct 216285 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATC 216226
Query 212108 CATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACG 212167
|||| || ||| |||||| || ||| | ||||| || | ||||| ||||||||| |
Sbjct 216225 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 216166
Query 212168 GTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTATG 212227
|||| | || || ||| | ||| | |||||||||| || || || | |
Sbjct 216165 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGG 216106
Query 212228 GTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCG 212287
|||||| || || ||||| |||||||| ||||| || || || || ||||| ||||| |
Sbjct 216105 GTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTG 216046
Query 212288 GTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCG 212347
| || | |||||||| ||||| || |||||| | ||||||||||||| | |
Sbjct 216045 GCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGG 215986
Query 212348 CATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCA 212407
| | |||||||| | | | ||||| || || | ||||| | || ||||| ||||
Sbjct 215985 CTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 215926
Query 212408 ACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTA 212467
||||||| |||||||| ||||||||||| || ||||| |||| ||| || ||
Sbjct 215925 ACCTAAACGGATTCAATTTCAACCAATCTGTACTTGATAGCCAAGGTCGCGTTATTAATA 215866
Query 212468 CTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATG 212527
|||||| |||| | | ||| | || || |||||||||||||| ||||||||| | ||||
Sbjct 215865 CTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATG 215806
Query 212528 CACACAACTTCCCACTTGACTTAGC 212552
| ||||||||||| || ||| ||||
Sbjct 215805 CTCACAACTTCCCTCTAGACCTAGC 215781
>seq3130
Length=1765
Score = 363 bits (402), Expect = 3e-95
Identities = 484/669 (72%), Gaps = 4/669 (1%)
Strand=Plus/Minus
Query 211612 GGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATCGT 211670
|| ||||| |||||| | |||||||| | ||| | | ||||||| | ||||| |
Sbjct 1321 GGATGGTTCGGTGTTTTGATGATCCC-TACCTTATTGACTGCAACTTCTGTATTTATTAT 1263
Query 211671 AGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTC 211730
|| ||||||||||| ||||| || ||||| || || || ||||| || || |||||||
Sbjct 1262 CGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTC 1203
Query 211731 ATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGG 211790
|| | ||||| ||||| || ||||||||||| || |||| |||| || |||||
Sbjct 1202 TTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGG 1143
Query 211791 TTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGG 211850
|| ||||| || || || |||||||| ||| || ||||||||||| | |||||||| ||
Sbjct 1142 ATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGG 1083
Query 211851 TCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACA 211910
||||| || | | | | |||||| | | || | | || ||||| | |
Sbjct 1082 CCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGA 1023
Query 211911 GTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACC 211970
||||||||| | |||| | ||||||||||||||||| |||||| |||||||| ||
Sbjct 1022 GTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 963
Query 211971 TGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGA 212030
||| |||| ||| ||||| ||| | |||| || | ||||| || ||||| ||
Sbjct 962 TGTTGCAGCTGCTACTGCTGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGA 903
Query 212031 CGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACA 212090
|||||||||||||| ||||| || || |||||||| ||| | |||||||| ||||| ||
Sbjct 902 TGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCA 843
Query 212091 TAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATT 212150
|||||||||||||| ||||| || ||| |||||| || ||| | |||||||| | |
Sbjct 842 CAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGTGGTTCCCT 783
Query 212151 ATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTT 212210
|||| |||||| || ||||| | || || ||| | ||| | ||||||||||
Sbjct 782 ATTCAGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAA 723
Query 212211 AGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGC 212270
|| || || ||||||||| || || ||||| |||||||| ||| || || ||
Sbjct 722 TGAATCTGCTAATGATGGTTACAGATTTGGTCAAGAGGAAGAGAC--TTAATATTGTGGC 665
Query 212271 TGCACATGG 212279
|| |||||
Sbjct 664 CGCTCATGG 656
>seq3676
Length=461187
Score = 291 bits (322), Expect = 1e-73
Identities = 430/604 (71%), Gaps = 9/604 (1%)
Strand=Plus/Plus
Query 211570 TTCTGCGACTGGGTAAC-ATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCT 211628
|||||| ||||| ||| | || | || ||| | | || | || |||| | |||| |
Sbjct 288189 TTCTGCAACTGGATAAATAGCACCGAA-AACCGTCTTTACATCGGATGGTCCGATGTTTT 288247
Query 211629 TATGATCCCATGTCTTCT-AGCTGCAACAACATGCTTTATCGTAGCATTCATCGCAGCAC 211687
|||||||| | ||| | | ||||||| | ||||| | || ||||||||||| |
Sbjct 288248 GATGATCCC-TACCTTATTAACTGCAACTTCTGTATTTATTATCGCCTTCATCGCAGCCC 288306
Query 211688 CTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACA 211747
|||| || ||||| || || || ||||| || || | ||| || | ||||| ||||
Sbjct 288307 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTCGATTCTTTACTTTATGGAAACA 288366
Query 211748 ACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTA 211807
| || ||||||||||| || |||| |||| || ||||| || ||||| || || |
Sbjct 288367 ATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAA 288426
Query 211808 TCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTGGTAA 211867
| |||||||| ||| || ||||||||||| | |||||||| || ||||| || | |
Sbjct 288427 TTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTG 288486
Query 211868 TCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAACTTTCATACC 211927
| | |||||| | | || | | || ||||| | |||||||||| | ||
Sbjct 288487 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCC 288546
Query 211928 GTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCG 211987
|| | ||||||||||||||||| |||||| |||||||| ||||| ||| ||| |
Sbjct 288547 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTG 288606
Query 211988 CTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTA 212047
|||| ||| | |||| || | ||||| || ||||| || |||||||||||||| |
Sbjct 288607 CTGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 288666
Query 212048 TATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACC 212107
|||| || || |||||||| ||| | |||||||| | ||| || |||||||||||||| |
Sbjct 288667 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGTAGAGCACAACATCCTTATGCATC 288726
Query 212108 CATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACG 212167
|||| | ||| |||||| || |||| || || | ||||| ||||||||| |
Sbjct 288727 CATTTCGCATGTTAGGTGTAGC-----TGTTTGGCGGTTCCCTATTCAGTGCTATGCATG 288781
Query 212168 GTTC 212171
||||
Sbjct 288782 GTTC 288785
>seq203
Length=971741
Score = 143 bits (158), Expect = 4e-29
Identities = 141/182 (77%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 212371 TGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAAC 212430
||||| || || | ||||| | || ||||| ||||||||||| |||||||| ||||||
Sbjct 777835 TGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATTTCAAC 777894
Query 212431 CAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGA 212490
||||| || |||||| |||| ||| || |||||||| |||| | | ||| |
Sbjct 777895 CAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGT 777954
Query 212491 GCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTA 212550
|| || |||||||||||||| ||||||||| | ||||| ||||||||||| || ||| ||
Sbjct 777955 GCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTA 778014
Query 212551 GC 212552
||
Sbjct 778015 GC 778016
>seq4136
Length=310402
Score = 141 bits (156), Expect = 2e-28
Identities = 177/243 (73%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 212236 TTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTT 212295
|| || ||||| |||||||| ||||| || || || || ||||| ||||| || || |
Sbjct 3273 TTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCCGATTA 3214
Query 212296 ATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGG 212355
|||||||| ||||| || |||||| | ||||||||||||| | || | |||
Sbjct 3213 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 3154
Query 212356 CCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAAT 212415
||||| | | | ||||| || || | ||||| | || ||||| |||||||||||
Sbjct 3153 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAAC 3094
Query 212416 GGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTACTTGGGGT 212475
|||||||| ||||||||||| || |||||| |||| ||| || |||||||| |
Sbjct 3093 GGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCT 3034
Query 212476 GAT 212478
|||
Sbjct 3033 GAT 3031
>seq4428
Length=185154
Score = 123 bits (136), Expect = 4e-23
Identities = 134/178 (75%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 212029 GACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAA 212088
|| ||||||||||||| ||||| || || |||||||| ||| | |||||||| |||||
Sbjct 19698 GATGGTATGCCTTTAGAAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAG 19639
Query 212089 CATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCA 212148
| |||||||||||||| |||| || ||| |||||| || ||| | ||||| || |
Sbjct 19638 TACAACATCCTTATGCATTCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCC 19579
Query 212149 TTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTG 212206
||||| |||| |||| ||||| | || || ||| | ||| | ||||||||||
Sbjct 19578 CTATTCAGTGCTTTGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 19521
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 807509552942320
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