Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq4204 479 3e-130 seq3130 334 9e-87 seq3676 269 3e-67 seq4136 181 1e-40 seq203 122 1e-22 seq4428 120 3e-22 >seq4204 Length=279751 Score = 479 bits (530), Expect = 3e-130 Identities = 693/976 (71%), Gaps = 19/976 (2%) Strand=Plus/Minus Query 170675 TGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCA 170734 ||| |||| ||| || || || | ||| | || ||||| ||||| || |||||||| Sbjct 216739 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCC- 216681 Query 170735 TGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGA 170793 | ||| | ||||| || || || ||| | || |||||| | || |||| ||| || Sbjct 216680 TACCTTATTGACTGCAACTTCTGTATTTATTATCGCCTTCATCACAGCCCCTCTAGTAGA 216621 Query 170794 TATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTC 170853 ||| || || || | || || ||| | ||||||| | ||||| ||||| || ||||| Sbjct 216620 TATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATGGAAACAATATTATCTC 216561 Query 170854 TGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGC 170913 |||||| | |||| |||| || || ||||| ||||| || || || |||||||| Sbjct 216560 TGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGC 216501 Query 170914 AGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTT 170973 || || | || |||||||| ||||| || || ||||| || || || || | ||||| Sbjct 216500 TGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTT 216441 Query 170974 CCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAAT 171033 | | |||| | || || |||||| | |||||||||| | | | || || || Sbjct 216440 CTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTAT 216381 Query 171034 GAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCT 171093 | | |||||||| ||| ||||| | ||| ||| | || ||| | Sbjct 216380 GCGTCCTTGGATTGCTGTTGCATATTTAGCTACTG---------------CTGTTTTCTT 216336 Query 171094 TGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTAC 171153 | ||||| | ||||| || ||||||||||||||||| |||| || || ||||| Sbjct 216335 GATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTAC 216276 Query 171154 GTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATAT 171213 |||||||| ||| | || ||||| ||||| |||||||| || ||||| || || || || Sbjct 216275 TTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACAT 216216 Query 171214 GGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGT 171273 | ||||||||| ||| | ||||| ||| || |||||||| ||||| ||||| | || Sbjct 216215 GTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGT 216156 Query 171274 GACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGGCTATAAGTT 171333 || ||| | | ||||| || || ||||| || || | || | || || | || Sbjct 216155 AACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAGATT 216096 Query 171334 CGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAAT 171393 || ||||| ||||| || ||||| ||||| || |||||||| ||||| || ||||||| Sbjct 216095 TGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCCGATTAAT 216036 Query 171394 CTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCC 171453 |||||| ||||| || |||||||||||||| |||||||||||| | |||| | || Sbjct 216035 CTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCC 215976 Query 171454 TGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGG 171513 |||||| | | ||||| || || | ||||| |||| ||||| |||||||| ||||| Sbjct 215975 TGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGG 215916 Query 171514 ATTCAACTTCAACCAATCAGTTGTAGAT-GCAAACGGAAAGATTGTACCAACATGGGGAG 171572 |||||| ||||||||||| || | ||| || || || || | || |||| | Sbjct 215915 ATTCAATTTCAACCAATCTGTACTTGATAGCCAA-GGTCGCGTTATTAATACTTGGGCTG 215857 Query 171573 ATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACT 171632 || | | ||| | || || ||||| |||||||| ||||| ||| | ||||| ||||||| Sbjct 215856 ATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACT 215797 Query 171633 TCCCACTAGACCTAGC 171648 |||| ||||||||||| Sbjct 215796 TCCCTCTAGACCTAGC 215781 >seq3130 Length=1765 Score = 334 bits (370), Expect = 9e-87 Identities = 491/691 (71%), Gaps = 4/691 (1%) Strand=Plus/Minus Query 170686 CACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTTCTA-A 170744 ||| || || || | ||| | || ||||| ||||| || |||||||| | ||| | | Sbjct 1343 CACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCC-TACCTTATTGA 1285 Query 170745 CTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAA 170804 |||| || || || ||| | || |||||||| || |||||||| ||||| || || | Sbjct 1284 CTGCAACTTCTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTA 1225 Query 170805 TCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAG 170864 | | || || ||| | |||||||| | ||||| ||||| || ||||||||||| | Sbjct 1224 TTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTA 1165 Query 170865 TTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGG 170924 |||| |||| || || ||||| ||||| || || || |||||||| || || | | Sbjct 1164 TTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTG 1105 Query 170925 ACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAA 170984 | |||||||| ||||| || || ||||| || || || || | |||||| | |||| Sbjct 1104 ATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTG 1045 Query 170985 TCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGA 171044 | || || |||||| | |||||||||| | | | || || ||| | ||||||| Sbjct 1044 TAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGA 985 Query 171045 TATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCAT 171104 | ||| ||||| ||||| ||||| | || || ||| || ||| | | ||||| Sbjct 984 TTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTATCCTA 925 Query 171105 TCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCA 171164 | ||||| || ||||||||||||||||| |||| || || ||||| |||||||| | Sbjct 924 TTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTA 865 Query 171165 TGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAG 171224 || | || ||||| ||||| |||||||| || ||||| || || || ||| |||||||| Sbjct 864 TGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAG 805 Query 171225 CAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTC 171284 | ||| | ||||||||| || |||||||| || || ||||| | || || ||| | Sbjct 804 CTGGTGTATTCGGTGGTTCCCTATTCAGTGCTATACATGGTTCCTTGGTAACCTCTAGTT 745 Query 171285 TAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAG 171344 | ||||| || || ||||| || || | || | || || | || || ||||| | Sbjct 744 TGATCAGGGAAACCACTGAAAATGAATCTGCTAATGATGGTTACAGATTTGGTCAAGAGG 685 Query 171345 AAGAAACATATAACATTGTTGCTGCTCATGG 171375 |||| || ||| ||||| || |||||||| Sbjct 684 AAGAGAC--TTAATATTGTGGCCGCTCATGG 656 >seq3676 Length=461187 Score = 269 bits (298), Expect = 3e-67 Identities = 411/583 (70%), Gaps = 7/583 (1%) Strand=Plus/Plus Query 170686 CACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTTCT-AA 170744 ||| || || || | ||| | || |||| | ||| || |||||||| | ||| | || Sbjct 288209 CACCGAAAACCGTCTTTACATCGGATGGTCCGATGTTTTGATGATCCC-TACCTTATTAA 288267 Query 170745 CTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAA 170804 |||| || || || ||| | || |||||||| || |||||||| ||||| || || | Sbjct 288268 CTGCAACTTCTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTA 288327 Query 170805 TCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAG 170864 | | || || ||| | |||||| | ||||| ||||| || ||||||||||| | Sbjct 288328 TTCGTGAGCCTGTTTTCGATTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTA 288387 Query 170865 TTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGG 170924 |||| |||| || || ||||| ||||| || || || |||||||| || || | | Sbjct 288388 TTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTG 288447 Query 170925 ACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAA 170984 | |||||||| ||||| || || ||||| || || || || | |||||| | |||| Sbjct 288448 ATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTG 288507 Query 170985 TCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGA 171044 | || || |||||| | |||||||||| | | | || || ||| | ||||||| Sbjct 288508 TAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGA 288567 Query 171045 TATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCAT 171104 | ||| ||||| ||||| ||||| | | || ||| || ||| | | ||||| Sbjct 288568 TTGCTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGCTGTTTTCTTGATTTATCCTA 288627 Query 171105 TCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCA 171164 | ||||| || ||||||||||||||||| |||| || || ||||| |||||||| | Sbjct 288628 TTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTA 288687 Query 171165 TGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAG 171224 || | || ||||| | ||| |||||||| || ||||| || || | ||| |||||||| Sbjct 288688 TGATTGTATTCCAGGTAGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTGTAG 288747 Query 171225 CAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTC 171267 | |||| || ||| || |||||||| ||||| ||||| Sbjct 288748 C-----TGTTTGGCGGTTCCCTATTCAGTGCTATGCATGGTTC 288785 >seq4136 Length=310402 Score = 181 bits (200), Expect = 1e-40 Identities = 170/215 (79%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 171328 TAAG-TTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTA 171386 |||| || || ||||| ||||| || ||||| ||||| || |||||||| ||||| || Sbjct 3278 TAAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCC 3219 Query 171387 GATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTG 171446 ||||||||||||| ||||| || |||||||||||||| |||||||||||| | |||| Sbjct 3218 GATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTG 3159 Query 171447 TATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACC 171506 | |||||||| | | ||||| || || | ||||| |||| ||||| ||||||| Sbjct 3158 CTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACC 3099 Query 171507 TTAACGGATTCAACTTCAACCAATCAGTTGTAGAT 171541 | ||||||||||| ||||||||||| || || ||| Sbjct 3098 TAAACGGATTCAATTTCAACCAATCTGTAGTTGAT 3064 >seq203 Length=971741 Score = 122 bits (134), Expect = 1e-22 Identities = 146/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 171454 TGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGG 171513 |||||| | | ||||| || || | ||||| |||| ||||| |||||||| ||||| Sbjct 777822 TGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGG 777881 Query 171514 ATTCAACTTCAACCAATCAGTTGTAGAT-GCAAACGGAAAGATTGTACCAACATGGGGAG 171572 |||||| ||||||||||| || || ||| || || | | | || | | |||| | Sbjct 777882 ATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATA-CTTGGGCTG 777940 Query 171573 ATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACT 171632 || | | ||| | || || ||||| |||||||| ||||| ||| | ||||| ||||||| Sbjct 777941 ATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACT 778000 Query 171633 TCCCACTAGACCTAGC 171648 |||| ||||||||||| Sbjct 778001 TCCCTCTAGACCTAGC 778016 >seq4428 Length=185154 Score = 120 bits (132), Expect = 3e-22 Identities = 138/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 171124 TGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGA 171183 |||||||||||| ||| || || ||||| |||||||| ||| | || ||||| ||||| Sbjct 19699 TGATGGTATGCCTTTAGAAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGA 19640 Query 171184 ACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAG 171243 ||||||| || ||||| | || || ||| ||||||||| ||| | ||||| ||| Sbjct 19639 GTACAACATCCTTATGCATTCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTC 19580 Query 171244 TCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGA 171303 || |||||||| |||| ||||| | || || ||| | | ||||| || || ||||| Sbjct 19579 CCTATTCAGTGCTTTGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGA 19520 Query 171304 GAACGA 171309 || || Sbjct 19519 AAATGA 19514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570236565556080