Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq4 104 3e-17 seq603 100 4e-16 seq2113 82.4 1e-10 >seq4 Length=1057841 Score = 104 bits (114), Expect = 3e-17 Identities = 112/146 (77%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 |||||||| ||||||||||| |||||||| | || || |||||||| || || || Sbjct 125373 CATGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTAAGA 125432 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| ||||| ||||| ||||||||||| |||| ||| || || || |||||| Sbjct 125433 CCCGGCATGAGGCCGCGCTTCTTAAGCCAAAAGATGGCGCAGAAGGAGCCCGAGAAGAAG 125492 Query 33424 ATTCCTTCTACTGCA-GCAAAGGCAA 33448 || || || || ||| || || |||| Sbjct 125493 ATGCCCTCGAC-GCAGGCGAAAGCAA 125517 >seq603 Length=994148 Score = 100 bits (110), Expect = 4e-16 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| ||||||||||| |||||||| | || || |||||||| || ||||| Sbjct 841775 CAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 841834 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| ||||||||||| || ||||| || |||| ||| ||||| || || ||| Sbjct 841835 CCCGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGCGCAGAAGGATCCCGAGAAAAAG 841894 Query 33424 ATTCCTTCTACTGCA-GCAAAGGC 33446 || || || || ||| || ||||| Sbjct 841895 ATGCCCTCGAC-GCAGGCGAAGGC 841917 >seq2113 Length=1451509 Score = 82.4 bits (90), Expect = 1e-10 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197 || |||||||| ||||| || | ||||| ||| ||||| ||||| | ||||||| Sbjct 1175795 TCAAACTCGTCACCCCAGCAATCAGCTAATCCTGGAGCTTCATTGGGACAAAACAACGAC 1175854 Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 63256 |||||| ||| || | |||| || ||| || |||||||||| ||| || || ||| || Sbjct 1175855 CACTCTTCGTTATTTTGGACTCTTTGCATGAATAGATCAGGAACCCAGAGTGC-ATAGAA 1175913 Query 63257 TAGATCTCTGGTTCTATGTTCCTC 63280 ||||| || | | ||| ||||| Sbjct 1175914 AAGATCCCTAGCACGATGCTCCTC 1175937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622911987909520