Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq1848 86.0 6e-12 >seq1848 Length=11040 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || ||||| || || || | |||||| |||| | || || Sbjct 5406 ATGCAGATTTTTGTGAAGACATTGACCGGCAAGACTATCACCCTCGAGGTGGAGTCCTCT 5465 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | |||||| ||||| || || || || || || || || || Sbjct 5466 GACACCATCGACAACGTCAAAGCTAAGATCCAGGATAAGGAGGGTATTCCCCCTGACCAG 5525 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || |||||||| || || |||| | | | || |||||| ||| Sbjct 5526 CAGCGTCTCATCTTCGCTGGCAAACAGCTGGAGGATGGCCGCACCCTCGCCGACTACAAC 5585 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || || || || |||| || ||||| | || || ||||| Sbjct 5586 ATCCAGAAGGAGTCCACCCTCCACCTCGTCCTCCGCCTCAGGGGAGG 5632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478635343607840