Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2113 105 2e-17 seq4119 98.7 3e-15 seq4413 89.7 1e-12 seq4282 86.0 2e-11 >seq2113 Length=1451509 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || || ||||||||| || | ||| || || ||| | |||||| |||| | Sbjct 1176740 ATGAAAGATGACAGCATCGAGGGAATATATGATACTCTGAAGGAATGTGCTGTTATAAGC 1176681 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATT 363741 || ||| || || ||||||||||| | |||||| | |||||| || || ||| Sbjct 1176680 AAATCTGCTGGAGGGATTGGTGTATCAGTTCACAATATCCGTGCAACTGGGAGCTATATT 1176621 Query 363742 CGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACT 363801 || || ||| ||| ||| ||||| | ||||| ||||| ||||| || | ||||| Sbjct 1176620 CGAGGAACAAATGGAACCTCCAATGGAATTGTTCCTATGCTGCGTGTTTTCAATGATACT 1176561 Query 363802 GCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 || | || || || || |||||||| ||| | ||||| Sbjct 1176560 GCCCGATATGTTGATCAAGGTGGAGGCAAGAGAAAAGG 1176523 >seq4119 Length=325369 Score = 98.7 bits (108), Expect = 3e-15 Identities = 132/183 (72%), Gaps = 8/183 (4%) Strand=Plus/Plus Query 371100 GCACCATGACTAATGATGGAATCCTTCTCCATCTCACCAATTCGGAGACCACCATCGCGT 371159 ||||||||| ||| ||| | ||| |||||||||| |||| |||||||||||||| ||| Sbjct 167647 GCACCATGAGCAATCATGCAGTCCCTCTCCATCTCTCCAAAGCGGAGACCACCATCACGT 167706 Query 371160 GACCGTCCTTCTGTTGGCGCGCGTGTAAGTAGCTGTTGTGCACCGCGG----TTGCGTGC 371215 || || || |||| || | ||||||| ||| | ||| ||| | | ||| Sbjct 167707 GAGCGCCCCTCTGCAGGTTGCCTGGTAAGTATCTGCACAGGACCACGGCCCCTAGAGTGA 167766 Query 371216 ATGTGACTTGTCAACTACCATGTGCTTGAGGCGCTGATAATAACACGGAGCAATAAAAAT 371275 || ||||||| | ||||||||||| || | ||| |||||| ||| ||| ||||| Sbjct 167767 AT----CTTGTCATCCACCATGTGCTTAAGTCTCTGGTAATAAGTAGGACCAAGGAAAAT 167822 Query 371276 CAT 371278 ||| Sbjct 167823 CAT 167825 >seq4413 Length=1061291 Score = 89.7 bits (98), Expect = 1e-12 Identities = 155/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACT-TAAGAATTGTGCTCTTATTTC 363680 ||||| || ||| |||||||| || | ||| || || | ||||| ||||| || Sbjct 3938 ATGAAAGATGATAGTATCGAGGGAATTTATGATACTCTATCAGAAT-GTGCTGCCATAAG 3996 Query 363681 CAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACA 363739 ||| ||| || ||||||||||| || || |||||| || | || || | ||||| | Sbjct 3997 CAAATGTGCTGGAGGAATTGGTGTCTCAATTCACAATATTAGAGCTACTG-GGAGTTATA 4055 Query 363740 TTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATA 363799 |||| || || ||| || || || | ||||||||||| ||||| || || ||| Sbjct 4056 TTCGGGGAACGAATGGAGCATCTAACGGAATTGTTCCCATGCTGCGTGTTTTCAACGATA 4115 Query 363800 CTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 |||| | || || || || |||||||| ||| | ||||| Sbjct 4116 CTGCACGTTATGTTGATCAAGGTGGAGGCAAGAGAAAAGG 4155 >seq4282 Length=242231 Score = 86.0 bits (94), Expect = 2e-11 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 111692 TCTTATGTGCCAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATC 111751 |||| | | | |||||||||| | ||||| ||| |||||||| |||||||| || || Sbjct 169799 TCTTCTCTTCTAGTTTTATGTTGAGAACGGGGAGCTATCATGCCAGATGTATCAACGCTC 169740 Query 111752 TGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCA 111788 ||| ||||| || ||||||||||| || || |||||| Sbjct 169739 TGCAGATATGGGACTTGGTGTTCCATTCAACATTGCA 169703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303278086136204