Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2113 95.1 2e-14 seq4 91.5 2e-13 seq603 87.8 2e-12 seq1636 86.0 8e-12 seq4413 82.4 1e-10 >seq2113 Length=1451509 Score = 95.1 bits (104), Expect = 2e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 ||| || ||||| || | ||| || ||||| ||||||||||| || ||| | | || Sbjct 1176869 AGTGCCTGCATTGAAAAGGGTCGGCGAAGCATGAGTAAACCAACGTTGAGACATCAAATG 1176928 Query 63526 GTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTA 63584 ||| || | ||||| ||||| || || | ||| || || || |||| || | ||| | Sbjct 1176929 GTAGGTTTTGATAGCAGAGTCGATGTCATCCTTG-TGTATCCCCACTGAAACTCTCATCA 1176987 Query 63585 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63644 ||||||||| || || ||||||| | | | ||||| | ||| ||| | |||| Sbjct 1176988 GCATGTGCTGCGGCCTCTCAACGACCGTCCCTCCAACCTTCAAGAGGTAAGATCTCTCCA 1177047 Query 63645 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||| || ||||| || |||| || |||||||| |||||||| || Sbjct 1177048 GAGTCTTGAAACCGAAGTAGTCATAATCAAAGTCTCTATCGTAAATTAT 1177096 >seq4 Length=1057841 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 |||||||| |||||||| || |||||||| | || | |||||||| || || || Sbjct 125373 CATGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTAAGA 125432 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 32779 || ||||| ||||| ||||| ||||||||||| |||| |||| || || || || ||||| Sbjct 125433 CCCGGCATGAGGCCGCGCTTCTTAAGCCAAAAGATGG-CGCAGAAGGAGCCCGAGAAGAA 125491 Query 32780 AATTCCTTCTAC 32791 || || || || Sbjct 125492 GATGCCCTCGAC 125503 >seq603 Length=994148 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| |||||||| || |||||||| | || | |||||||| || ||||| Sbjct 841775 CAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 841834 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 32779 || ||||| ||||||||||| || ||||| || |||| |||| || ||||| || || || Sbjct 841835 CCCGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGG-CGCAGAAGGATCCCGAGAAAAA 841893 Query 32780 AATTCCTTCTAC 32791 || || || || Sbjct 841894 GATGCCCTCGAC 841905 >seq1636 Length=685599 Score = 86.0 bits (94), Expect = 8e-12 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 ||| || ||||| || | ||| || ||||| ||||||||||| | | ||| | |||| Sbjct 391527 AGTGCCTGCATTGAAAAGGGTTGGTGAAGCATGAGTAAACCAGTGCTGAGACATCAGATG 391468 Query 63526 GTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTA 63584 ||| || | ||||| ||||| || || | ||| || || || ||| || | ||| | Sbjct 391467 GTAGGTTTTGATAGCAGAGTCGATGTCATCCTTG-TGTATCCCCACTAAAACTCTCATCA 391409 Query 63585 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63644 ||||||| | || || ||||| | ||| | ||||| | ||| ||| | |||| Sbjct 391408 GCATGTGCCGCGGCCTCTCAACAACCTTCCCTCCAACCTTCAAGAGGTAAGATCTCTCCA 391349 Query 63645 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 63690 ||| || ||||| || |||| || |||||| | |||||||| Sbjct 391348 GAGTCTTGAAACCGAAGTAGTCATAATCAAAGTCCCTGTCGTAAAT 391303 >seq4413 Length=1061291 Score = 82.4 bits (90), Expect = 1e-10 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 ||| || ||||| || | ||| || || || ||||||||||| | ||| | | | Sbjct 3830 AGTGCCAGCATTGAAAAGGGTTGGTGATGCATGAGTAAACCAGCGCTGAGACATCATGTG 3771 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63584 ||| || ||||| || || ||||| | ||| ||||| || | | || | ||||| Sbjct 3770 GTATGTTCTGATAGCAGACTCAATATCATCCTTG-TGAATCCCAATGGAAACTCTCATTA 3712 Query 63585 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63644 ||| ||||| |||||||| || | ||| | |||||||| || ||| | || | Sbjct 3711 GCATATGCTGTGGTCTTTCCACAACCTTTCCACCAACTTTCAACAGATAAGATCTCTCAA 3652 Query 63645 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 || |||||||||||||||| ||| ||| |||| || ||||| || Sbjct 3651 GGGTCTTAAAACCAAAATAGTCGTAGTCAAAATCTCTATCATAAATTAT 3603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633596183951200