Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq4197 116 3e-21 seq1848 113 4e-20 seq4493 107 2e-18 seq1042 93.3 4e-14 seq359 93.3 4e-14 seq2778 89.7 4e-13 >seq4197 Length=262831 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || |||||||| | || || ||||| || Sbjct 76139 ATGCAGATTTTTGTCAAGACCCTGACTGGCAAGACCATCACACTTGAGGTCGAGTCCTCG 76198 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| || ||| ||||| || || || || || |||||| Sbjct 76199 GACACGATCGACAATGTGAAGGCTAAGATCCAGGACAAGGAGGGTATCCCCCCAGACCAA 76258 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || ||||| || | || |||| ||||| ||| ||| ||||| Sbjct 76259 CAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCCGACTACAAC 76318 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || || | || || ||||| || ||||| Sbjct 76319 ATCCAGAAGGAGTCCACCCTCCACCTTGTACTTAGGCTCAGGGGAGG 76365 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||||||| ||| | ||||| | || || ||||||||| Sbjct 76595 ATGCAGATCTTTGTGAAGACCTTGACCGGCAAAACAATCACCCTGGAGGTTGAGTCGTCT 76654 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || ||||| || ||| ||||| || || || || || ||||| Sbjct 76655 GACACAATTGACAACGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCGGACCAG 76714 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| || || || | || |||| ||||| | | ||||||||| Sbjct 76715 CAGCGTCTGATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTTGCGGATTACAAT 76774 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || || | ||||| Sbjct 76775 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCT 76806 >seq1848 Length=11040 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || || | ||||| | || |||||||| || Sbjct 6090 ATGCAGATTTTTGTGAAGACTTTGACTGGCAAGACTATCACCCTTGAGGTGGAGTCTTCC 6149 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| || || ||||| || ||||| Sbjct 6150 GACACCATCGATAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 6209 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| || | || |||| ||||| ||| || ||||| Sbjct 6210 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTACAAC 6269 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || |||||||| || || | ||||| Sbjct 6270 ATCCAGAAGGAATCCACTCTTCACCTGGTGCT 6301 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| ||||||| || | ||||| | || |||||||| || Sbjct 5634 ATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACTATCACTCTTGAGGTGGAGTCTTCC 5693 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||| || || ||||| || ||||| Sbjct 5694 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAG 5753 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||||||||| || | || || | ||||| | | ||| ||||| Sbjct 5754 CAACGCTTGATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTCGCCGACTACAAC 5813 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || || || || | || || | || || ||||| Sbjct 5814 ATCCAGAAGGAGTCTACCCTCCACCTTGTCCTCCGCCTCAGGGGAGG 5860 >seq4493 Length=164055 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| |||| || || | ||||| |||| |||||||| ||| Sbjct 95748 ATGCAGATCTTCGTCAAGACTCTGACTGGCAAGACTATCACCCTCGAGGTGGAGTCTTCT 95807 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||| || || ||||| || ||||| Sbjct 95808 GACACCATTGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAG 95867 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | ||||||| ||||| | | || ||||| Sbjct 95868 CAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTGCTGACTACAAC 95927 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || || || ||| | || || | || || ||||| Sbjct 95928 ATCCAGAAGGAGTCAACCCTTCATCTTGTCCTCCGCCTCAGGGGAGG 95974 Score = 98.7 bits (108), Expect = 9e-16 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| || || | ||||| | || |||||||| ||| Sbjct 95976 ATGCAGATCTTTGTGAAGACATTGACTGGCAAGACTATCACCCTTGAGGTGGAGTCCTCT 96035 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || || || ||| || ||| ||||| || || || || ||||||| Sbjct 96036 GACACCATTGA--CAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACC 96093 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| |||| ||||||||||| || | || |||| | ||| | | || |||| Sbjct 96094 AGCAGCGTCTTATCTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACTCTTGCTGACTACA 96153 Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201 | || || || || || || || || Sbjct 96154 ACATCCAGAAGGAGTCAACCCTTCA 96178 >seq1042 Length=22717 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||| ||||||||||| || || |||||||| | || ||||| |||||||| || || Sbjct 10466 GACAAGGAAGGGATTCCTCCAGATCAACAGCGTTTGATATTTGCTGGCAAACAGTTGGAG 10525 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| ||||| ||| || ||||| ||||| || || || || || || || || || Sbjct 10526 GATGGACGCACATTGGCTGACTACAACATTCAGAAGGAGTCGACTCTTCACTTGGTCCTC 10585 Query 25212 AGGCTAAGAGGAGG 25225 ||||| || || || Sbjct 10586 AGGCTCAGGGGTGG 10599 >seq359 Length=971778 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||| ||||||||||| || || |||||||| | || ||||| ||||| || || || Sbjct 509515 GACAAGGAAGGGATTCCTCCGGATCAACAGCGTTTGATATTTGCTGGCAAGCAGTTGGAG 509574 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| ||||| ||| || ||||| ||||| || ||||| || || || || || || Sbjct 509575 GATGGACGCACACTGGCTGACTACAACATTCAGAAGGAATCAACTCTTCACTTGGTCCTC 509634 Query 25212 AGGCTAAGAGGAGG 25225 ||||| || || || Sbjct 509635 AGGCTCAGGGGTGG 509648 >seq2778 Length=1391004 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| | || || || |||| | | || || ||| || Sbjct 174000 ATGCAGATCTTTGTCAAGACTCTCACAGGCAAGACCATTATTCTGGAGGTTGAGAGCTCC 173941 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| ||||| | || | ||| ||||| ||||| || || || ||||| Sbjct 173940 GACACCATCGACAATGTGAAGGCCAAGATTCAG-GACAAGGAAGGTATCCCCCCAGACCA 173882 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||||||||| || | || |||| || || | | ||| ||||| Sbjct 173881 GCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGTACCCTTGCCGACTACAA 173822 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| ||||| || || || || | ||||| Sbjct 173821 CATTCAGAAAGAGTCTACCCTCCACCTGGTGCT 173789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433304118481430