Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq4204 554 5e-153 seq3130 367 1e-96 seq3676 255 7e-63 seq4136 206 3e-48 seq203 188 8e-43 seq2035 120 3e-22 seq4428 91.5 2e-13 seq4517 84.2 2e-11 >seq4204 Length=279751 Score = 554 bits (614), Expect = 5e-153 Identities = 718/990 (73%), Gaps = 19/990 (2%) Strand=Plus/Minus Query 166053 CTTCTGCGAATGGGTTACCTCTACCAACAACCGTCTTTATGTTGGTTGGTTTGGCACACT 166112 ||||||| | ||| | || ||| | ||||||||||| | || ||||| || | Sbjct 216749 CTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTT 216690 Query 166113 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCTTTCGTAGCGGCAC 166171 |||||| || || | ||| | ||||| ||||| || || |||| ||| | | || | Sbjct 216689 GATGATCCCTACCTTATTGACTGCAACT-TCTGTATTTATTATCGCCTTCATCACAGCCC 216631 Query 166172 CTCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAACA 166231 ||| || ||||| ||||| || |||||||| || | | ||| || | ||||| |||| Sbjct 216630 CTCTAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATGGAAACA 216571 Query 166232 ACATCATCTCTGGTGCTGTTGTCCCCTCCTCCAACGCAATTGGTCTTCACTTCTATCCCA 166291 | || ||||||||||| || | || | || || || || | ||||| || || | Sbjct 216570 ATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAA 216511 Query 166292 TCTGGGAAGCAGCATCACTTGATGAATGGCTTTATAACGGTGGTCCTTTCCAGCTCGTAG 166351 | |||||||| ||||| ||||||| ||| | || || || || |||| |||| | | Sbjct 216510 TTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTG 216451 Query 166352 TCTTCCACTTCCTCATCGGCATCTATGCCTACATGGGTCGTGAATGGGAATTGTCTTACC 166411 | | |||||| | | || | | || ||||||||||| |||||| || || || Sbjct 216450 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCC 216391 Query 166412 GCCTCGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCCG 166471 | || |||||||||||||||||| || ||||| | || ||| || Sbjct 216390 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTTAGCTACTGCTG------------ 216343 Query 166472 CAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCCTGGGTA 166531 | ||| || | |||||| | |||||||| ||||||||| | ||||| | || | Sbjct 216342 ---TTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 216286 Query 166532 TCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTCATGCACC 166591 | ||| || ||||||| ||| |||| ||||| ||||||||||||||||| ||||| | Sbjct 216285 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATC 216226 Query 166592 CCTTCCATATGCTGGGTGTAGCAGGTGTATTCGGTGGGTCACTTTTCTCGGCAATGCACG 166651 | || || ||| | |||||||| ||||||||||| || || || ||| || ||||| | Sbjct 216225 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 216166 Query 166652 GCAGTCTCGTTACTTCCTCGCTCG-TCCGTGAGACCACTGAAACTGAGTCTCAAAACTAT 166710 | | || || || | | | | || | || |||||||||| ||| ||| || | Sbjct 216165 GTTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAG 216107 Query 166711 GGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTGGCTGCTCATGGTTACTTC 166770 ||||||| ||||||||||| |||||||| || || || ||||| |||||||||||||| Sbjct 216106 GGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTT 216047 Query 166771 GGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCGCTGCACTTCTTCCTC 166830 || || | ||||||||||| ||| || ||||||||||| || | ||||||||| | Sbjct 216046 GGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTG 215987 Query 166831 GCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTTGGTGTTAGCACCATGGCATTC 166890 || || |||||||| || || || ||||| |||||| | ||| |||| || ||||| ||| Sbjct 215986 GCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 215927 Query 166891 AACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAAC 166950 ||||| ||||| ||||| |||||||| || | | ||| | || ||||| || | || Sbjct 215926 AACCTAAACGGATTCAATTTCAACCAATCTGTACTTGATAGCCAAGGTCGCGTTATTAAT 215867 Query 166951 ACTTGGGCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAAT 167010 |||||||| ||| || ||||||||||| ||| |||||||||||||||||||| |||||| Sbjct 215866 ACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAAT 215807 Query 167011 GCTCACAACTTCCCTCTGGATCTTGCTGCT 167040 ||||||||||||||||| || || |||||| Sbjct 215806 GCTCACAACTTCCCTCTAGACCTAGCTGCT 215777 >seq3130 Length=1765 Score = 367 bits (406), Expect = 1e-96 Identities = 501/693 (72%), Gaps = 6/693 (1%) Strand=Plus/Minus Query 166075 ACCAACAACCGTCTTTATGTTGGTTGGTTTGGCACACTGATGATTCCAACTCTGTTGGCA 166134 ||| | ||||||||||| | || ||||| || ||||||| || || | ||| | Sbjct 1342 ACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACT 1283 Query 166135 GCAACCATCTGT-TTCATCGTCGCTTTCGTAGCGGCACCTCCTGTCGATATCGATGGGAT 166193 ||||| ||||| || || |||| ||| | || || ||||| || ||||| ||||| || Sbjct 1282 GCAACT-TCTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTAT 1224 Query 166194 CCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGT 166253 |||||||| || | || ||| || | ||||| ||||| || ||||||||||| || | Sbjct 1223 TCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTAT 1164 Query 166254 CCCCTCCTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCATCACTTGA 166313 || | || || || || | ||||| || || || |||||||| ||||| |||| Sbjct 1163 TCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGA 1104 Query 166314 TGAATGGCTTTATAACGGTGGTCCTTTCCAGCTCGTAGTCTTCCACTTCCTCATCGGCAT 166373 ||| ||| | || || || || |||| |||| | || | |||||| | | || | Sbjct 1103 TGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT 1044 Query 166374 CTATGCCTACATGGGTCGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGAT 166433 | || ||||||||||| |||||| || || ||| || ||||||||||||||||| Sbjct 1043 AGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGAT 984 Query 166434 TTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTT 166493 | || ||||| || || ||||||||||| || | || || ||| || | |||||| | Sbjct 983 TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTATCCTAT 924 Query 166494 CGGTCAAGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACAT 166553 |||||||| ||||||||| | ||||| | || || ||| || ||||||| || Sbjct 923 TGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTAT 864 Query 166554 GCTTGTCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGC 166613 | |||| ||||| ||||||||||||||||| ||||| || || || ||| | |||||||| Sbjct 863 GATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 804 Query 166614 AGGTGTATTCGGTGGGTCACTTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCT 166673 |||||||||||||| || || ||| || || || || | || || | || | | Sbjct 803 TGGTGTATTCGGTGGTTCCCTATTCAGTGCTATACATGGTTCCTTGGTAACCT-CTAGTT 745 Query 166674 CG-TCCGTGAGACCACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAG 166732 | || | || |||||||||| ||| ||| || ||||||||| ||||||||||| | Sbjct 744 TGATCAGGGAAACCACTGAAAATGAATCTGCTAATGATGGTTACAGATTTGGTCAAGAGG 685 Query 166733 AAGAGACCTACAACATCGTGGCTGCTCATGGTT 166765 ||||||| | || || ||||| |||||||||| Sbjct 684 AAGAGACTT--AATATTGTGGCCGCTCATGGTT 654 >seq3676 Length=461187 Score = 255 bits (282), Expect = 7e-63 Identities = 382/540 (71%), Gaps = 2/540 (0%) Strand=Plus/Plus Query 166075 ACCAACAACCGTCTTTATGTTGGTTGGTTTGGCACACTGATGATTCCAACTCTGTTGGCA 166134 ||| | ||||||||||| | || |||| | ||||||| || || | || | Sbjct 288210 ACCGAAAACCGTCTTTACATCGGATGGTCCGATGTTTTGATGATCCCTACCTTATTAACT 288269 Query 166135 GCAACCATCTGT-TTCATCGTCGCTTTCGTAGCGGCACCTCCTGTCGATATCGATGGGAT 166193 ||||| ||||| || || |||| ||| | || || ||||| || ||||| ||||| || Sbjct 288270 GCAACT-TCTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTAT 288328 Query 166194 CCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGT 166253 |||||||| || | ||| || | ||||| ||||| || ||||||||||| || | Sbjct 288329 TCGTGAGCCTGTTTTCGATTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTAT 288388 Query 166254 CCCCTCCTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCATCACTTGA 166313 || | || || || || | ||||| || || || |||||||| ||||| |||| Sbjct 288389 TCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGA 288448 Query 166314 TGAATGGCTTTATAACGGTGGTCCTTTCCAGCTCGTAGTCTTCCACTTCCTCATCGGCAT 166373 ||| ||| | || || || || |||| |||| | || | |||||| | | || | Sbjct 288449 TGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT 288508 Query 166374 CTATGCCTACATGGGTCGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGAT 166433 | || ||||||||||| |||||| || || ||| || ||||||||||||||||| Sbjct 288509 AGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGAT 288568 Query 166434 TTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTT 166493 | || ||||| || || |||||||||| || | || || ||| || | |||||| | Sbjct 288569 TGCTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGCTGTTTTCTTGATTTATCCTAT 288628 Query 166494 CGGTCAAGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACAT 166553 |||||||| ||||||||| | ||||| | || || ||| || ||||||| || Sbjct 288629 TGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTAT 288688 Query 166554 GCTTGTCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGC 166613 | |||| ||||| | ||||||||||||||| ||||| || || | ||| | |||||||| Sbjct 288689 GATTGTATTCCAGGTAGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTGTAGC 288748 >seq4136 Length=310402 Score = 206 bits (228), Expect = 3e-48 Identities = 197/252 (78%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 166720 TTTGGTCAAGAAGAAGAGACCTACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTG 166779 ||||||||||| |||||||| || || || ||||| |||||||||||||| || || | Sbjct 3273 TTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCCGATTA 3214 Query 166780 ATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGG 166839 ||||||||||| ||| || ||||||||||| || | ||||||||| | || || ||| Sbjct 3213 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 3154 Query 166840 CCTGTTGTCGGTATCTGGTTTACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAAC 166899 ||||| || || || ||||| |||||| | ||| |||| || ||||| |||||||| ||| Sbjct 3153 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAAC 3094 Query 166900 GGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCA 166959 || ||||| |||||||| || | | ||| | || ||||| || | || |||||||| Sbjct 3093 GGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCT 3034 Query 166960 GATGTCCTCAAC 166971 ||| || ||||| Sbjct 3033 GATATCATCAAC 3022 >seq203 Length=971741 Score = 188 bits (208), Expect = 8e-43 Identities = 161/199 (81%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 166842 TGTTGTCGGTATCTGGTTTACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGG 166901 ||| || || || ||||| |||||| | ||| |||| || ||||| |||||||| ||||| Sbjct 777822 TGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGG 777881 Query 166902 TTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGA 166961 ||||| |||||||| || | | ||| | || ||||| || | || |||||||| || Sbjct 777882 ATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGA 777941 Query 166962 TGTCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTT 167021 | || ||||||||||| ||| |||||||||||||||||||| ||||||||||||||||| Sbjct 777942 TATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTT 778001 Query 167022 CCCTCTGGATCTTGCTGCT 167040 |||||| || || |||||| Sbjct 778002 CCCTCTAGACCTAGCTGCT 778020 >seq2035 Length=9416 Score = 120 bits (132), Expect = 3e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 168043 CAATAAGCGTTGGTTGCACTTCTTTATGCTTTTCGTTCCTGTCATGGGACTTTGGACAAG 168102 |||||| |||||||| | ||||||||||| || || || |||| || | |||| || Sbjct 3838 CAATAAACGTTGGTTATATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAG 3779 Query 168103 TTCTATTGGTATCATCGGTCTCGCACTTAATCTTCGTGCTTATGACTTTGTGTCTCAGGA 168162 | ||||||| | |||| || || || || || ||||| ||||||||||| || |||| Sbjct 3778 TGCTATTGGCGTAGTCGGCCTAGCTCTGAACCTACGTGCCTATGACTTTGTTTCCTAGGA 3719 Query 168163 AGTTAGAGCAGCAGAGGATCCAGAGTTTGAAACTTTCTATACGAAAAACAT 168213 | | | ||||| || ||||| || ||||| |||||||| || ||||| || Sbjct 3718 AATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATAT 3668 >seq4428 Length=185154 Score = 91.5 bits (100), Expect = 2e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 166536 TGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTT 166595 ||| || ||||||| ||| |||| ||||| |||||| |||||||||| ||||| | || Sbjct 19675 TGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGTACAACATCCTTATGCATTCATT 19616 Query 166596 CCATATGCTGGGTGTAGCAGGTGTATTCGGTGGGTCACTTTTC 166638 || ||| | |||||||| ||||||||||| || || || ||| Sbjct 19615 TCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTC 19573 >seq4517 Length=143961 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 168005 AACCGATTCTGGTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTC 168064 ||||| || || || |||| |||||| ||||||| |||||| |||||||| || ||| Sbjct 80646 AACCGCTTTTGATCCTAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTC 80587 Query 168065 TTTATGCTTTTCGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTC 168124 |||||||| || || || |||| || | |||| ||| ||||||| | |||| || Sbjct 80586 TTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTA 80527 Query 168125 GCACTTAATCT 168135 || || || || Sbjct 80526 GCTCTGAACCT 80516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567199937211200