Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq72 96.9 4e-15 seq670 95.1 1e-14 seq2414 93.3 5e-14 seq4235 91.5 2e-13 seq3543 91.5 2e-13 seq2885 89.7 6e-13 seq2158 89.7 6e-13 seq559 89.7 6e-13 seq4308 87.8 2e-12 seq4190 86.0 7e-12 seq4031 82.4 9e-11 seq4006 82.4 9e-11 >seq72 Length=127035 Score = 96.9 bits (106), Expect = 4e-15 Identities = 85/105 (81%), Gaps = 6/105 (6%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAG 126321 |||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | | Sbjct 101890 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGG 101949 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 ||||||||| || ||||| |||||| ||| ||| ||||||| Sbjct 101950 CGTGGGTTCAAATCCCACTTCTGACATATT----TTGTAATTTTT 101990 >seq670 Length=854540 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/94 (83%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 324635 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 324694 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTAT 126356 |||||||| || ||||| ||||||| || |||| Sbjct 324695 GTGGGTTCAAATCCCACTTCTGACAATTTTTTAT 324728 >seq2414 Length=582708 Score = 93.3 bits (102), Expect = 5e-14 Identities = 74/88 (84%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGG 126319 ||| |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | Sbjct 442720 TACGGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAG 442779 Query 126320 AGCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| |||||||| |||||| Sbjct 442780 GGCGTGGGTTCAAACCCCACTTCTGACA 442807 >seq4235 Length=1159497 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/84 (85%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 1121982 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 1122041 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| |||||||| |||||| Sbjct 1122042 TGGGTTCAAACCCCACTTCTGACA 1122065 >seq3543 Length=1405827 Score = 91.5 bits (100), Expect = 2e-13 Identities = 74/89 (83%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGG 126319 ||| |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | Sbjct 430944 TACGGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAG 431003 Query 126320 AGCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| || ||||| ||||||| Sbjct 431004 GGCGTGGGTTCAAATCCCACTTCTGACAA 431032 >seq2885 Length=1410918 Score = 89.7 bits (98), Expect = 6e-13 Identities = 79/98 (81%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 1116015 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 1116072 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTT 126365 ||| || |||||| ||| || ||| ||||| | |||| Sbjct 1116073 TTCAAATCCCACAGCTGTCATATTTTTATTTTATTTTT 1116110 >seq2158 Length=614900 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/91 (82%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 60982 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 61041 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATT 126354 ||||||| || ||||| |||||| ||| || Sbjct 61042 TGGGTTCAAATCCCACTTCTGACATATTTTT 61072 >seq559 Length=911044 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/86 (84%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 165164 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 165105 Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348 |||||||| || ||||| ||||||| Sbjct 165104 GTGGGTTCAAATCCCACTTCTGACAA 165079 >seq4308 Length=228010 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/80 (85%), Gaps = 2/80 (3%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| | |||| ||||||| Sbjct 64624 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGTCCTTTCGG--GCGTGGG 64681 Query 126328 TTCGAACCCCACACCTGACA 126347 ||| || |||||| ||| || Sbjct 64682 TTCAAATCCCACAGCTGTCA 64701 >seq4190 Length=2156036 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 1569938 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 1569997 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 1569998 TGGGTTCAAATCCCACTTCTGACA 1570021 >seq4031 Length=365558 Score = 82.4 bits (90), Expect = 9e-11 Identities = 80/101 (79%), Gaps = 3/101 (3%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 84596 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 84539 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGT 126368 ||| || |||||| ||| | | || || || | ||||||| Sbjct 84538 TTCAAATCCCACAGCTGTC-ATTTTTTCTTTGTTTTTTTGT 84499 >seq4006 Length=385206 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 181831 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 181888 Query 126328 TTCGAACCCCACACCTGACAAATT 126351 ||| || |||||| ||| || ||| Sbjct 181889 TTCAAATCCCACAGCTGTCATATT 181912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556829323443280