Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq603 367 2e-96 seq4 347 2e-90 >seq603 Length=994148 Score = 367 bits (406), Expect = 2e-96 Identities = 526/733 (72%), Gaps = 26/733 (4%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || |||||||||||||||||||| || || || |||||||| || | ||||||||| Sbjct 842202 CTCGCCTTCTTCGCCGCCTCTGATGGTATCGTGCTCGAGAACCTCGCGTCGAGGTTCATG 842143 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || |||||| | ||||||||| ||||||||| |||||||| ||||| |||||| Sbjct 842142 TCCGACGTGCAGGTCGCCGAGGCGCGCGCCTTCTACGGTTTCCAGATCGCCATCGAGAAC 842083 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | || || ||| ||||| | |||||| | |||||||||| || ||||||| Sbjct 842082 ATCCATTCGGAGATGTACTCGCTGCTGCTCGAGACGTACATCCGCGACGACGTCGAGAAG 842023 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 || | || ||| ||||| || || | ||| | | ||||| |||||||| Sbjct 842022 GACCGCCTTTTCCGCGCCATAGACACCGTTCCCGCCGTGCGCCGCAAGGCCGACTGGGCC 841963 Query 42663 CTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 | ||||||||| | || ||| |||| |||| | || || ||||| || Sbjct 841962 ATGCGCTGGATCGACGGCGGTGAGCGC----TTCGCCGAGCGCCTAGTCGCCTTCGCCTG 841907 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-GG 42780 ||||||||||||||| |||||||| ||||| | ||||||||||||||||| || || Sbjct 841906 CGTCGAGGGCATCTTTTTCTCGGGATCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGTGG 841847 Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 || ||||| || ||||||||||| ||||| |||||| | | |||||||| ||||| Sbjct 841846 CCTC-ATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACT 841788 Query 42841 GGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCG 42898 | ||||| ||||||||||| | ||| || |||| | |||| || || ||| || Sbjct 841787 GCGACTTCGCCTGCCTCCTCT--ACGA-CCTCCTCCGCGGCAAG--CTTGACGAGGCCCG 841733 Query 42899 GGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCT 42958 ||||| || ||| || | || ||||| || ||||||| | | ||| || | | || Sbjct 841732 CGTCCGTGCAATCGTCGCCGAAGCCGTCGACATCGAGAGGAACTTCGTCTGCGACGCTCT 841673 Query 42959 GCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGC 43018 ||||| | || |||||||||||| |||||||||| || |||||||| ||| |||||| Sbjct 841672 CCCCGTCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGC 841613 Query 43019 CGACCATCTCCTGTGCCAGATGGGTCTCAGCCGC------CTCTACAACACGCCGTGCCC 43072 |||| ||||| |||| ||| || || | |||||| | ||| Sbjct 841612 TGACCGCCTCCT------AATGGCGCTCGGCTGCAAGAAGATGTACAACGTCACCAACCC 841559 Query 43073 CTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGT 43132 |||||||| |||||| |||||| || ||||||||||||| || |||||||||||||| Sbjct 841558 CTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAATTTCTTCGAGAAGCGCGT 841499 Query 43133 CGCCGACTACCAG 43145 || |||||||||| Sbjct 841498 CGGCGACTACCAG 841486 >seq4 Length=1057841 Score = 347 bits (384), Expect = 2e-90 Identities = 527/735 (72%), Gaps = 30/735 (4%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || |||||||||||||||||||| ||||| || |||||||| || ||||||||||| Sbjct 125800 CTCGCCTTCTTCGCCGCCTCTGATGGCATCGTGCTCGAGAACCTCGCGTCCAGGTTCATG 125741 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || |||||| | ||||||||| ||||||||| |||||||| ||||| ||||| Sbjct 125740 TCCGACGTGCAGGTCGCCGAGGCGCGCGCCTTCTACGGGTTCCAGATCGCCATCGAGAAT 125681 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| ||| ||||| | |||||| | |||||||||| || ||||||| Sbjct 125680 ATCCACTCGGAGATGTACTCGCTGCTGCTCGAGACGTACATCCGCGACGACGTCGAGAAG 125621 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAG-AAGGCGGACTGGGC 42661 || | || ||| ||||| || || | |||||| | | ||||| || ||||| Sbjct 125620 GACCGTCTCTTCCGCGCCATCGACACCGT-CCCTGCTGTGCGCCGCAAGGCCGAGTGGGC 125562 Query 42662 GCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCG 42720 | ||||||||| | ||| ||| |||| |||| | || || || || || Sbjct 125561 CATGCGCTGGATCGACGGCGGCGAGCGC----TTCGCCGAGCGCCTCGTTGCTTTCGCCT 125506 Query 42721 CCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAG 42779 ||||||||||||||||||||||||| ||||| | ||||||| ||||| ||| || | Sbjct 125505 GCGTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTTTGGCTTAAGAAGCGCG 125446 Query 42780 GTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCAT 42839 | || ||||| || || |||||||| ||||| |||||| | | |||||||| ||||| Sbjct 125445 GCCTC-ATGCCGGGTCTTACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCAC 125387 Query 42840 AGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGC 42897 | ||||| || |||||||| | ||| || |||| | |||| ||||| || | Sbjct 125386 TGCGACTTCGCATGCCTCCTCT--ACGA-CCTCCTCCGCGGCAAG--CTCGATGAGACCC 125332 Query 42898 GGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGC 42957 | ||||| | ||| || || ||||| || ||||| | ||||||| || | ||| Sbjct 125331 GCGTCCGCGAGATCGTCGTTGACGCCGTCGACATCGAAAGGGAGTTCGTCTGCGACGCGC 125272 Query 42958 TGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCG 43017 | ||||| | || |||||||||||| | ||| ||| || |||| ||| ||| ||||| Sbjct 125271 TCCCCGTCGCTCTCGTCGGCATGAACGGAGTCCTGATGAGCCAGTATATCGAGTTCGTCG 125212 Query 43018 CCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGC------CTCTACAAC-ACGCCGTGC 43070 ||||| | |||| | |||| ||| || || | |||||| |||| Sbjct 125211 CCGAC---CGCCTG---CTCATGGCGCTCGGCTGCAAGAAGATGTACAACGTCGCC-AAT 125159 Query 43071 CCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGC 43130 |||||||||| |||||| |||||| || |||| ||||||||||| |||||||||||| Sbjct 125158 CCCTTCGACTGGATGGAGCTCATCTCCCTGCAGGGAAAGACCAACTTCTTCGAGAAGCGC 125099 Query 43131 GTCGCCGACTACCAG 43145 |||| |||||||||| Sbjct 125098 GTCGGCGACTACCAG 125084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944285821226720