Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq348 98.7 8e-16 seq1692 95.1 1e-14 seq2624 91.5 1e-13 seq4493 89.7 4e-13 seq2570 89.7 4e-13 seq3413 84.2 2e-11 seq2778 84.2 2e-11 seq1848 84.2 2e-11 seq1042 84.2 2e-11 seq891 84.2 2e-11 seq359 82.4 6e-11 >seq348 Length=941607 Score = 98.7 bits (108), Expect = 8e-16 Identities = 105/136 (77%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||| |||| ||| |||| ||| || ||| ||| ||||||||||||||||| || Sbjct 470072 CCACCTCTGAGCCTCAGGACCAAATGGAGAGTGGACTCTTTCTGAATGTTGTAATCAGCT 470013 Query 33961 AAT-TGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 ||| ||| || | || ||||||||||| || ||||| ||||| | |||||||| || Sbjct 470012 AATGTGT-GCCCATCTTCCAATTGCTTCCCTGCAAAAATCAGCCTTTGCTGATCTGGGGG 469954 Query 34020 CACGCTCTCTTTGTCC 34035 | | |||||||||| Sbjct 469953 AATACCCTCTTTGTCC 469938 >seq1692 Length=674084 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || |||| ||| |||| ||| || || ||| ||||||||||||||||| || Sbjct 587136 CCACCCCTGAGCCTCAGGACCAAATGGAGTGTTGACTCTTTCTGAATGTTGTAATCAGCT 587195 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 ||| ||| | || ||||||||||| || ||||| ||||| | |||||||| || Sbjct 587196 AATGTGCGCCCATCTTCCAATTGCTTCCCTGCAAAAATCAGCCTTTGCTGATCTGGGGGA 587255 Query 34021 ACGCTCTCTTTGTCC 34035 | || |||||||||| Sbjct 587256 ATGCCCTCTTTGTCC 587270 >seq2624 Length=565299 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| || |||| ||||| ||||| || || ||||||||||||||||||||| || Sbjct 25538 ACCTCCCCTGAGCCTGAGCACAAGATGGAGTGTAGACTCCTTCTGAATGTTGTAATCAGC 25597 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || | || |||| |||||||| ||||| || || |||||||| ||| || Sbjct 25598 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAGG 25657 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079 | | ||| |||||| || || ||| | | | | || | |||||| Sbjct 25658 GATACCCTCCTTGTCCTGGATCTTAGCCTTCACGTTGTCGATCGTGTCTGAGGATTCGAC 25717 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | ||| ||||| || ||||| | || || |||||||| ||||| Sbjct 25718 CTCAAGCGTAATTGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 25765 >seq4493 Length=164055 Score = 89.7 bits (98), Expect = 4e-13 Identities = 104/137 (76%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || || ||||| || ||||| ||| ||||||||| |||||||| || || Sbjct 95746 CCTCCCCTGAGACGGAGCACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC- 95688 Query 33961 AATTGTCGCT--CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 || ||| || |||| |||| |||||||| ||||| || || ||||||||||| | Sbjct 95687 AAGGGTC-CTGCCGTCCTCCAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCTGGGG 95629 Query 34019 GCACGCTCTCTTTGTCC 34035 | | || ||| |||||| Sbjct 95628 GAATGCCCTCCTTGTCC 95612 >seq2570 Length=608568 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | |||| || || || || |||||| ||||||||| |||||||| || ||| Sbjct 261063 CCTCCGCGAAGCCTGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 261004 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | ||| |||| |||| ||||||||||| || ||||| |||||||||||| Sbjct 261003 AGGGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGATCC 260950 >seq3413 Length=1400 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/92 (83%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 114333 TCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAAC 114390 ||||||||| |||||||||||||||| |||||||| |||| || || ||| |||||| Sbjct 1127 TCATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAAAAAAG-AATATCCGAGGAAC 1185 Query 114391 CAAAACTGATATATTGAGCCATTCGTGGTATC 114422 | ||||||| || ||||||||||| ||| || Sbjct 1186 CGTAACTGATTTAATGAGCCATTCGCGGTTTC 1217 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/92 (83%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 115530 TCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAAC 115587 ||||||||| |||||||||||||||| |||||||| |||| || || ||| |||||| Sbjct 1127 TCATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAAAAAAG-AATATCCGAGGAAC 1185 Query 115588 CAAAACTGATATATTGAGCCATTCGTGGTATC 115619 | ||||||| || ||||||||||| ||| || Sbjct 1186 CGTAACTGATTTAATGAGCCATTCGCGGTTTC 1217 >seq2778 Length=1391004 Score = 84.2 bits (92), Expect = 2e-11 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || || || || |||||||| || || || ||| |||||||||||||| || | Sbjct 173773 ACCACCCCTGAGGCGGAGCACCAGGTGGAGGGTAGACTCTTTCTGAATGTTGTAGTC-GG 173831 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 ||| || || | || |||| |||||||||||||| |||||||||||||| || Sbjct 173832 CAAGGGTACGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTC 173886 >seq1848 Length=11040 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| ||||| ||| |||||||| |||||||| ||||||| || Sbjct 6307 AGGCGGAGCACCAGGTGAAGAGTGGATTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGG 6248 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || |||| ||||||||||| || || || |||||||| ||| || | || ||| Sbjct 6247 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCC 6188 Query 34030 TTGTCC 34035 |||||| Sbjct 6187 TTGTCC 6182 >seq1042 Length=22717 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || || |||| || |||| ||||| || |||||||||||||||||| || || Sbjct 10600 ACCACCCCTGAGCCTGAGGACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCAGC 10541 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 |||| || | || ||||| || ||||| |||||||||| ||||| ||||| Sbjct 10540 CAATGTGCGTCCATCCTCCAACTGTTTGCCAGCAAATATCAAACGCTGTTGATC 10487 >seq891 Length=1582050 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || |||||| ||||||||| |||||||| || || | || Sbjct 1149476 AGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGG 1149535 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | ||||||||||| || || ||||||||||| ||| ||| | || ||| Sbjct 1149536 CCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 1149595 Query 34030 TTGTCC 34035 |||||| Sbjct 1149596 TTGTCC 1149601 >seq359 Length=971778 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || || |||| || |||| ||||| || ||||||||||||||||| || || Sbjct 509649 ACCACCCCTGAGCCTGAGGACCAAGTGAAGAGTTGATTCCTTCTGAATGTTGTAGTCAGC 509590 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 || | || | || ||||| |||||||| |||||||||| ||||| |||||| Sbjct 509589 CAGTGTGCGTCCATCCTCCAACTGCTTGCCAGCAAATATCAAACGCTGTTGATCC 509535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397040517146644