Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq603 145 2e-29 seq4 123 5e-23 >seq603 Length=994148 Score = 145 bits (160), Expect = 2e-29 Identities = 356/534 (67%), Gaps = 8/534 (1%) Strand=Plus/Minus Query 243208 CTTTTCGACGCCATCGAAAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAG 243267 |||||| |||||| || | | |||| || || | |||||| | ||||| | Sbjct 842016 CTTTTCCGCGCCATAGACACCGTTCCCGCCGTGCGCCGCAAGGCCGACTGGGCCATGCGC 841957 Query 243268 TGGCTAGAACCCGGTAAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGT 243327 ||| | || |||| | || || ||||| || ||||||| | ||||| || || Sbjct 841956 TGGATCGACGGCGGTGAGCGCTTCGCCGAGCGCCTAGTCGCCTTCGCCTGCGTCGAGGGC 841897 Query 243328 ATTCTGTTTTCCGGGAGT-TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCC 243386 || || ||| ||||| |||||||||||||| ||||| ||| || | ||||| Sbjct 841896 AT-CTTTTTCTCGGGATCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCC 841838 Query 243387 TGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGG 243446 |||||| | || |||||| ||||| |||||||||||||| ||| | |||| Sbjct 841837 GGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGC 841778 Query 243447 TGAGCTTATGTATTCAAAGCTCCAGAACAAGCT--ACCATTCGAAACG-GTCAAACAAAT 243503 || | || |||| |||||| || | | || ||| ||| Sbjct 841777 CTGCCTCCTCTACGACCTCCTCCGCGGCAAGCTTGACGAGGCC---CGCGTCCGTGCAAT 841721 Query 243504 CATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCT 243563 | || | ||||| || || | ||| | | | ||| | ||||||||| | || | ||| Sbjct 841720 CGTCGCCGAAGCCGTCGACATCGAGAGGAACTTCGTCTGCGACGCTCTCCCCGTCGCGCT 841661 Query 243564 TATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTT 243623 | ||||||||| || |||||| | ||||||||||| ||||| || |||||| | | Sbjct 841660 CGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGCTGACCGCCTCCT 841601 Query 243624 CATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCT 243683 || ||||| || | |||| |||||||| || |||||||| | || |||||||| Sbjct 841600 AATGGCGCTCGGCTGCAAGAAGATGTACAACGTCACCAACCCCTTCGACTGGATGGAGCT 841541 Query 243684 CATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||| || || || || || || || |||||||| ||||| ||| | || || || Sbjct 841540 CATCTCCCTGCAGGGCAAGACCAATTTCTTCGAGAAGCGCGTCGGCGACTACCA 841487 >seq4 Length=1057841 Score = 123 bits (136), Expect = 5e-23 Identities = 299/450 (66%), Gaps = 2/450 (0%) Strand=Plus/Minus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || ||||| ||||| || | | ||||| || || || | || || || ||| Sbjct 125533 TTCGCCGAGCGCCTCGTTGCTTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTC 125474 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||||||||||||||||| ||| || | ||||| || || | || |||||| Sbjct 125473 TGCGCCATCTTTTGGCTTAAGAAGCGCGGCCTCATGCCGGGTCTTACCTTCTCCAACGAG 125414 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTC 243468 ||||| |||||||||||||| ||| | |||| || | || ||| Sbjct 125413 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCATGCCTCCTCTACGACCTCCTC 125354 Query 243469 CAGAACAAGCTACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAACGA 243527 | |||||| | || || || ||| | ||| || || || || || | ||| Sbjct 125353 CGCGGCAAGCT-CGATGAGACCCGCGTCCGCGAGATCGTCGTTGACGCCGTCGACATCGA 125295 Query 243528 AAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCAT 243587 || ||| ||| | |||||||| | || | || | ||||||||| | || || Sbjct 125294 AAGGGAGTTCGTCTGCGACGCGCTCCCCGTCGCTCTCGTCGGCATGAACGGAGTCCTGAT 125235 Query 243588 GGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGT 243647 | | ||||| ||||| ||||| ||||||||| | |||| ||||| || | |||| | Sbjct 125234 GAGCCAGTATATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTCGGCTGCAAGAAGAT 125175 Query 243648 GTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAA 243707 ||||||| | || ||||| | || ||||||||||| || || || || || || || Sbjct 125174 GTACAACGTCGCCAATCCCTTCGACTGGATGGAGCTCATCTCCCTGCAGGGAAAGACCAA 125115 Query 243708 CTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||||||||| ||||| ||| | || || || Sbjct 125114 CTTCTTCGAGAAGCGCGTCGGCGACTACCA 125085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102816101200700